Array 1 215995-213220 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWR02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0114 NODE_2_length_419217_cov_72.157532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215994 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 215933 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 215872 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 215811 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 215750 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 215689 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 215628 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 215567 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 215506 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 215445 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 215384 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 215323 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 215262 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 215201 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 215140 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 215079 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 215018 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 214957 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 214896 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 214835 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 214774 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 214713 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 214652 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 214591 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 214530 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 214469 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 214408 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 214347 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 214286 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 214225 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 214164 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214103 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214042 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 213981 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 213920 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 213859 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 213798 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 213737 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 213676 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 213615 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 213554 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 213493 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 213432 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 213371 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 213310 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 213249 29 96.6 0 ............T................ | A [213222] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233385-232746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWR02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0114 NODE_2_length_419217_cov_72.157532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233384 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 233323 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 233262 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 233201 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 233139 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 233078 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 233017 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 232956 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 232895 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 232834 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 232773 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //