Array 1 24596-23505 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCL01000001.1 Streptococcus mutans strain UAB-2 NODE_1_length_345792_cov_24.6531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24595 36 100.0 30 .................................... TAATTGAAGCCGATGATGAATACATCTCAA 24529 36 100.0 30 .................................... AAATGGAAAATAAAACCAATGTTTGGAAAG 24463 36 100.0 30 .................................... TGGCACGCGCTTTATCCGTTATGAATGTTA 24397 36 100.0 30 .................................... TAAAGCCATCTAGCGCAGATAACGCTATTT 24331 36 100.0 30 .................................... TCGGCAAGAGTCACTTAGCTTACAGCATGA 24265 36 100.0 30 .................................... ATATTTCGCCAATACTTTTTTTAAGATTAG 24199 36 100.0 30 .................................... TCATAGCTTTACCTTTGTCAGCGTTGCCGG 24133 36 100.0 29 .................................... AAACGCAAGCGGAAGTGCGAGAACGCAAG 24068 36 100.0 30 .................................... TTCTGCAAACCCAAGCCATCTAGCCGAATG 24002 36 100.0 30 .................................... ATAGTTTTTGTTTTAGTTCTAAATCTGCTT 23936 36 100.0 30 .................................... TAAAGCCATCTAGCGCAGATAACGCTATTT 23870 36 100.0 30 .................................... AATCTACAAAGCAAGATTTTGACCACAGAA 23804 36 100.0 30 .................................... TGGTTATTAGTCTTATAGTCGTCTGCTTGT 23738 36 100.0 30 .................................... ACTATGAAAAGGAATTAAACGAACAACTCA 23672 36 100.0 30 .................................... AATAAACACTTTATCAATTTTGCCAGTTGA 23606 36 100.0 30 .................................... TTTTAGACAATATTACCCAATATCAGATCA 23540 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGATTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : AAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCCTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20139-20839 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCL01000020.1 Streptococcus mutans strain UAB-2 NODE_20_length_22331_cov_26.8652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20139 32 100.0 34 ................................ TCGCTTAGCAAATCTTGGTGTCAACCCAGGTCTA 20205 32 100.0 34 ................................ ATTCTTGTTATATGGTGAAAGTTTTGTATATATT 20271 32 100.0 35 ................................ AGAAGATGATTAAGAATACGCAAAAGCAATTGCAG 20338 32 100.0 35 ................................ CAGAAGCAGAGCAGACCCCGCGGGCATCTGCTGGC 20405 32 100.0 36 ................................ GAGCGTAAACGGTTTATAGCTGTAATATACAGGCTT 20473 32 100.0 34 ................................ TTCATTCACTTCAAAACTCCTAAAACGGCAAATC 20539 32 100.0 34 ................................ TCTTATATCTTTATAATTGTCCATCTCTTACCCT 20605 32 100.0 35 ................................ AAACATTAGTCAATAATACTGACGTCGCTTTCCAG 20672 32 100.0 36 ................................ TGGTACCAACAAGACGATAATCAAACTGACTGAGTC 20740 32 100.0 36 ................................ TGGTGGCGTGAAACGTTTTGGGCCGGGCGATTAAAC 20808 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGTTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //