Array 1 360495-361462 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEE01000004.1 Lachnotalea sp. AF33-28 AF33-28.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 360495 33 100.0 33 ................................. TGTCTGCGGAATGTAAGTAAGGCGAGTACCGAT 360561 33 100.0 34 ................................. TGTTTCAGGTGGCGCATCATAGTTAGCAAGATCT 360628 33 100.0 34 ................................. TGGCACTGGTAACTATCCCGTTGATGCTTTAACT 360695 33 100.0 34 ................................. CATCCTCAAGTTGTTAATTGCTGCCTGCATATTG 360762 33 100.0 34 ................................. ATCTTAATCGTACCCGGTACATCCTCTGTACAAT 360829 33 100.0 35 ................................. GCGAATAGTTACAGATCCTTTAGGTTACACCCCAA 360897 33 100.0 33 ................................. CTTTTAATAAGTTACCTGCGCGAAACAGACTAC 360963 33 100.0 35 ................................. CAGATCATGTGTTTTTGCGCTTCCAATTTATCGGC 361031 33 100.0 34 ................................. GCATGTACAGAGATATACGTGCTGCACCCAAAAG 361098 33 100.0 34 ................................. TAAATCTGTTGCTGGCAGCGCATTATCTCAAACA 361165 33 100.0 34 ................................. CCCTCATTGGCCGGGTGGTACATTGTCAGGAGTT 361232 33 100.0 33 ................................. GCGTTGTTGTTTAGCATAACATTTGCCACATAG 361298 33 100.0 34 ................................. ATTTTTGATTTCCTCCGTTCTCTTAACTTCTGAT 361365 33 97.0 32 ........C........................ TGAATCAATTCGTCTATATAGTTGTTTGCGCA 361430 33 75.8 0 ........C.A.A....AA..A..C.....T.. | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.2 34 GTCATCCGTTGCGAAACGGATGTGGATTGAAAT # Left flank : CTCCGTGAAATGCGCAGCAGCTCTCACCAATCGCCAGGTTGATGACCTGTGCGCACATCAGTGCGCTTCCTCGTACGGGCTTTGCGGGATCCCTAAGAGGACTATACTCTGCTCCGCTCTGCGCTGCTATATCGGCAATCATGAACAATAACGTCAACGATGACACGTATGCTTGAAAATATTACTGGATTATATCTGAAAAGCTGTTATAATAAACACGTAGATTGAATTTGAAATATTATTGAATCGGAACAGATAATGGATTTGTAAAACTATGATTGTGGTGCGGTGGACTGAGAAAAGCGGTTTGAAATGAGGCATATTTTTTAGTGCGAACCCCAAGTGAACATGAATTTCCTGGGAGGTTCGCACTTGAATTTGTTGTTAATTAGCGGTGAAAATGTTGTTCAGTTAATAAAAAAAGAAACGTAGAAGAATAAAATTGGGCAATGTGTATGTATTACAGAGCGGTAATGTATTAGTAAGTGTCACTTTTTGCT # Right flank : TTTTTGCGGTTACGCGCAAATATAAGACAGATCGCGCCATACTATGTAAAAAACATATAGGAAAACATATGAAAAGTACTAACGAATCACTAAGAAAACGCGGAATGGCATCAGAGGGCGATATCGCTGCGCTGTCAGACCTGACATATGAAGATCTGGTTGCCGCTTTGCATGCGGCGGACTCATGCACGAGAAGTGCGGCGGCGTATTGTCTGCGTTCCCAGGCGGACCGGGCGGCTGACGAACTGCTCGGTCAGCTCGCCGGGGAGAAATGTCTGTATACCCGCATTGCTGTCTGCGAGTGTCTGGAAAAAGGGAGTATCGTAACGGCCGAAAAGATGATCGGCTGTCTTGGCCATATCGGCAATAATCAGTACAGAGTGCCGCCGGATAAGGTTTCGGCAAAAAAATCCTTTCCACTGCCAAGAGATATCATTGCCCGCAGCCTTGGCAGGATGGATATCTCTGTTTTTCCGGCGCTTCAAAGATGCCTTAAGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCGTTGCGAAACGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 320733-320437 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEE01000003.1 Lachnotalea sp. AF33-28 AF33-28.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 320732 32 100.0 33 ................................ CGTTAATTAATTCCAGATCTGTAGTATTTAGAA 320667 32 100.0 33 ................................ GCAAATAGTTGATGGGCAACCGGCCGCGACGGG 320602 32 100.0 35 ................................ CTCCTCCGGCAGGCGTTCCAGCCAGTAGGCCGTTG 320535 32 96.9 35 ..........T..................... ATCGGTTCCGTAGAACTCCAGGTCATGCTGCGCAA 320468 32 81.2 0 ....T......C.........CT...C...G. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 34 GTCGCCGTCCCTGCGACGGCGTGGATTGAAAT # Left flank : AGCAGAAGAAACAGCAGTCATTGGTGAACAGTCTGGAAATCGGAGACAGCGTGCTGACTACCAGCGGTTTTTACGGAGTGGTGATCGATATCACAGAGGACACCGTGATCGTAGAATTCGGCAATAATAAAAACTGCCGTATCCCCATGCAGAAATCCGCAATTACGGATGTGGAGAAGGCAAACGCCGAGTAATTAAAATGACAAAATGAAGACAGCTCCCTGCCGGCGGGAAGAGAAGGATGTAATCAATGTTCATCTGCTGGATAAGGGGCTGTTTTTTGATATGCGCAGAAAATTTACAGTCCCGCATACATCCGCCTGTTTCGGTGCGAACCTGAAGTGAACATGAATTTCCTGGGAGGTTCGCACCTGAAAAAGACGGAAATAAGTGCTTTTCGGTGATGCGAAATGGACGAAATATGGGAAAATGCAGAAATAATTGTGCAATATGATTGAAATTGTGGTAAGATGGTTCTATGAAATATGGTTATATTTGCG # Right flank : GGTAGCTGAGTGGAATAATTTTGAAAAGAATCTGTTAAATAGGAAAAGGCGTGGGGAGAATACTTTACGCCTTTTCTTTTGGTATCTTTACCAGTAGTAATGAATGAAACACTTGGTAATAATACAGTATTTTCAGATATAGGCAGAAAAAATGGAATATCCTTCAGTACTAATCGGATATACGACAGGGGACAGGGCACCAAAGTAGATGTGATGTTTGATCGTGATACAGTATGGCTGACGACAGCACAAATGACGTATATTTTTCAAAGGGTCAGGAGCGTAATATTGGAATATATAAAAAATAGCAAATTTTCGTGTTTTTCTAAACCTGCTCCATGTAAACGAATAGAGAGTGGAAAGCCTGATAGATGGAGCAGGTGTGGGACTTTTTAACTTGTTCTTTTGAAAATTTTGCATTTTGGATTTATTAATCTCCGCCCAAGATCCCGCCCGGATTATATAGTGGACCTTAACAAGCTATATAGAGGGTTGACGAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGTCCCTGCGACGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 31732-30848 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEE01000015.1 Lachnotalea sp. AF33-28 AF33-28.Scaf15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 31731 31 100.0 33 ............................... CGGTTGGCGGGTTGCTCGATTGGGCGGTGGATG 31667 31 100.0 34 ............................... CTAGCCATGCGCTATTATTATACATTTTTATACC 31602 31 100.0 35 ............................... CGTTTACGCTGATTCCGCCATCATGGATCACCGTA 31536 31 100.0 34 ............................... ATCCGCACCAAGCTGTAAAACCTGATCCAAAGCA 31471 31 100.0 36 ............................... ACCTGCATCATTAAGACGATAAACGCCCCCCGAACG 31404 31 100.0 36 ............................... AGATGTTCAGGCGGCGATCCTGGAGGCAATGCAGTC 31337 31 100.0 33 ............................... GATACCAAGAAACGAACAAACAAAAGAACTTAA 31273 31 100.0 34 ............................... ATGCAGTTTACAAGCATATTCCCATGCTACCTCT 31208 31 100.0 34 ............................... TCCCGGTTGATGATATAAATGTCGGCCGGCGTGT 31143 31 100.0 34 ............................... TGCGTTCCACATCTACATATATGACCGGGCATGT 31078 31 100.0 35 ............................... AGAAAACCGTACAAATACAAGAAAGGAGGATGATT 31012 31 100.0 36 ............................... ACACATAGCAAACGGCAACAGCATTTCCAAGGGAGT 30945 31 93.5 36 .........................C....C CTAGCTAGCAGTGGCGGGTGTACGATATTATTAATC 30878 31 74.2 0 .......TT...T..C.A..CA..C...... | ========== ====== ====== ====== =============================== ==================================== ================== 14 31 97.7 35 GTCGCTACCTCGCGGTAGCGTGGATTGAAAT # Left flank : CCAGCCGCCACGAAGAAAAAATGGACTGGAGCGGCCTGATGGGCGCTATGACCTTTGAAGGTGATCTGGTCCCATTTATTCCCTGGCTGAACGCGGCAGAGGTGCTGCATATTGGCAGAAATGTTACGCTGGGATATGGGAAAATCGATGTGATATTTTGTTGAATCCAGGGGGTGGATGCATTTAAGGTGTATTATAGTGAAAATTTACAGCAAAATTACTAATAATTGTTGATATTTACTTAATTTTGCAGTAATATAAGGATAGATTGCAGAAAGTGTGATTGGGTTGTGGACATAAAAAGTTGATAGAAATTTTGTATGGCGTTTGGTGCGAACCTTAAGTGAACATAAAATTGCCGGGAGGTTCGCACCAAAATAGTTTGTGTGGGGTGGGCAGTTGACTTGGAAAAGTCGGATTTATTTGTTGAAACTGGATAATTGTATGTTTGAATTATGGATTGGGCGAAAATGATGTGTGTAATATTGCGAATTTTTGCA # Right flank : GTCACAGGCGTATCACGCCAAATTACAATATGTAATTTCTAAAATTACACATACGCTGCCTATACACCAGAAATATATTTGCCATACGAAAGCTACACAATCCATATCTCTCCACACTAAATTTTACCCAGCCCAGCAAAGAAAAAAGAGCACAAAGAAACCTTGTCTGAACCAGCTATTTCATGTATACTGTATTCTATCAGCACATAACGCCGCAATCATTTCGGCAAATAGGAGGTGACCGCAGATGGACAGCTATGCTACTTTTAATGATGTTCTTGTCAGGCTATTCAATGAGATCATGGACATAGAAGAAAGAGCGATTATCACAGAAGAGTTTAAAGACATAACGAATAACGATATGCATGTGATCGAAGCGATTGGAATCAGTACGATGAAAAATATGTCGACGATAGCCAGGGCGCTGTCCGTTACGGTAGGAACGCTGACCATATCTATGAACAGCCTGGTAAAAAAGGGCTATGTTGTCAGAAACCGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTACCTCGCGGTAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //