Array 1 1-138 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000025.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 16 57.1 33 ------------................ CACAGCAACAAGACCAGCACCAACAACAGTTCA 50 28 100.0 32 ............................ ACACATTGGTTAGTTTACTGGGTGTTTAACGG 110 28 92.9 0 .........................TT. | T [133] ========== ====== ====== ====== ============================ ================================= ================== 3 28 83.3 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : ACTGGCTGCAGCTATTGCTTCTTTTATTTCATCAGAACTATACCCTTTTGAAGACAAGTAAGCATAGGCTTTACTTTTATCTTTAAAATCAGATAGATTAAACCGTTTTTTAGCCAGTACTAATTGACAATTTTTATAAAAATCGACCTCACCTGCTTCCTCTAAATCGTAGAGTACTTGCTCAAGATGAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACCGTTTTGCCTTTGAGCTTACGTACTAACTTCAACACTTCTGTTTCTAAATCTGCATTCATGCCTTTGATTTTAGCTTTACTTAATAATGTATCTGCGGCGGTGTGTTCTGAAATTGCAAATGAAATGTCCTGAAAACTAAATCCACGCTTAGTAAGATCGTTGGTTACTTTTTCTTGCGTCGTTTGGCTAAAATCCTCATAGTTACTTAGGCGACGGGTTATTATCGCAAGTTCTGATACCTGATTTTTATCGATGATCTCAGCTAAGG # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27706-27870 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000040.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27706 32 100.0 34 ................................ ATTACCTTGCGTCAGTACGTAATCACCATCAGTT 27772 32 100.0 35 ................................ ATCGCAACAATATCTACAACTTTTTTAATCATTTG 27839 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Left flank : CTTCTATCATCGTTAATTGAGAACGCTAACTATGATGGTATTAGTAACCTATGATGTCTGTTTAAGTGATTCATCTGGCAGACGTCGGCTGCGACAAATAGCCAAACTTTGTTTAGATTATGGTGTAAGAGTTCAATATTCAGTATTTGAGTGTGATATAGCACCAGATCAATGGGTCAAATTTAAAGCTAAACTACTGGCATTGTATGAACCAGAAGTAGATAGTTTACGTTTTTACCAATTAGGGAAAAATTGGCGTCACCGCGTTGAACATCATGGTGCTAAAGTTGCTGTCGATATATACCAAGATAACTTGATTATCTAATTCGCTAACCTTCTGTTCTCATGAAAAACCCACTAGGCTAGCTAAATTTTAATTCACTGATCATAAAGTTCTTTTACAATTTAGGATCTACTATTCAAAAAATCATCTTACTTTTAAATATGGTTAGCGCAAAAGAGGTATTCAGCGTAGCTACGCCAGCCTTACCCAAAAGGCA # Right flank : TAAATCAGTAAC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17579-17131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000048.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17578 28 100.0 32 ............................ AGAAATGGTTAAGGCAATGACAGGGTGATCGA 17518 28 100.0 32 ............................ TTGAACATCGCTACCAGCAACAATCGCTTTGC 17458 28 100.0 32 ............................ TTTCTTTAGGAATGGACGCATTAACGCTGTAT 17398 28 100.0 32 ............................ ATGAGGGGCATCCGCCTACTAAAGCCGAAGTA 17338 28 100.0 32 ............................ AAGCAGTGTTATTGAATCAATAGTACGTCAAC 17278 28 100.0 32 ............................ TGCTCCTGTTGAAGCATTTTAATTAATTGTTC 17218 28 100.0 32 ............................ ATGATTGTTTTGATTGCATGATCTGCGCCGTA 17158 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCTAGGTGAGGTATGTGGCCTAGAGG # Left flank : AATAATCGAGGTGATGGTGATAAGCGCGTACATTTTGAATGTGAAATTTGTAAATACATCGAAAATGCAGATGTTGTTGGCGCCATTAATGTTGCTGGGAAAAAAATATGGCTGATGAAAAATGGCAGGCCTATCAAAGGGAAAAAAATCCCAACTGATTTATTATTTCAGAACTGGCAAGCAGAGCACCTTCAACTATGATTAAAGAGGTTGCGGGATGGATTTTAAATAATCTATTTTACCCTCTCAACCAAGTACTGATTAACGCCGAACGCGTCCTAGACCCTAACGTTGATTGGGCAAAAGTCACTGACGATAATCTGCAATGAGCAATGCTCAGAGTGGTAGAACGTAATTCGTATCGTCCGATACCCTTTTTTAAACGTGTCTTGTAAGTCATTGTTTTATGAAGCGTATCAAACATCACTTAGATATATGGTCATTTAGCTAGAATCTTACTAATTCACTGAACTAGTGGTGTTTTTAGTAAAAAACCTACA # Right flank : AGAATTAACCGATCAGGAAGGATTAATTCTTCGGTAGGAATGTTGGTTCAGTTACAGCGCCTCAAACGCTCTGTAATTGACGATATTGCATATATCGCCACAATCCCTTCAGTTACCACTAAAAATCCAGCACAACGTCATTCAGGCGCCTTAACATCAATCTATTATCATTACTTAAAATGTATTTAGAAAGTAGGGGGCCGTTTCTGTTTTTTAAATCAAAAGAAAACAAATCCGTTTGTTGGCAATTCGGAACGAATTTCTGACATACGTAGATCGCTTTAACGCTTTAGATCGCTTTAAACGCTTTAAAGACGCGCGCGTGCGGTAATAGAGGAAATAATTTAAAGGTGTAACGATTTGAGGAGAAAGGTGTAACGATTTGAGAAGAAAGGTGTAGTGATTTGAGGAGAAAGGTGTAAGAGATTTTTGTGGATAACTATCCATTTTATTTTTTAAAGGTGTAACGATTTGAGGAGAAAGGTGTAAGAGAAATAAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGGTGAGGTATGTGGCCTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 18638-18492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000049.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18637 15 46.9 33 -----------------............... TAGACGGCTTTATGACGGTGCAGTTTGTTTTGA 18589 32 100.0 34 ................................ TTCCTTGGCTAAATCTTCCAGTGCCTTGATGCAG 18523 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 82.3 34 GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Left flank : | # Right flank : AATGGTTGGCGTACAAATGGCAATGATGATAGGTGCGTCATGATCAAGCTAACTGTTGCCAATCCAATGATTGATAATCAAGTTCATTACCAAAGAGGCGGCATTGGGTTATTTAATCTTGAATCATTTCAGGGGTGACACACATGCCAAACAAAATAATAACGTCACTTTTTTATCATATGTTAATGACAACAAGTCGAAAAATAAGCGCTTGAGGTGAACTCGAATCCCATCATTAGTGCAAGTTAATAAATCTCAAAAAATGGCTAGGGGTTATTATATCTACTCCCCACCAATCAGCCTAAAAGTCACCTCATCCAGCGGCGATTTACCATCCTTAAATAGCCGCAAATAATCCTCATAGCTCAGTGAATGATATTGGTTAGCAGGCTTTCAGTAGCGAAGCTCTTAGAGATAATATTGGCTTTCTAGGTTAGCCGGTTAATTGAAAAACAAGATGGTATTTGGGGCAACAAGGCCAAGCCAGTACATTTAGAAAC # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.11, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15017-14699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000052.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 15016 36 100.0 34 .................................... AGAGCGAATATTGTAATACTGATCTGTATCATTT 14946 36 100.0 35 .................................... GAGCTAAATCCTGCGTTACGTGGGCGGTAGTGCAC 14875 36 100.0 35 .................................... TTCGAAAGACGCCCTAGGATAGCAGATAAAAACTG 14804 36 97.2 34 .........................C.......... TGAGTCTCACATTTAACAGGCACTGGCTCAACAC 14734 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 5 36 99.4 35 GCTCATCCGAGTGTAAAAACTCGGCTACATTGAAGC # Left flank : ATGCTTACA # Right flank : AAACATTTGTTGTTTTATCACACCATATCAGCGAACTTATCCACCCATTTCACATAACATCTGTTATATCAACTCACCACCAATCAGCCTCAAAGTCACCTCATCTAGCGGCGATTTACCATCTTTAAATAACCGCAAATAGTCCTCATAGCTCAGTGAATGATACCACTCACGCTGTTTAGCCTTATACTCGTCCCATTGAGCATCATCAGCTCTTATCTCAACTAATCGCTGCCGTTCACGCTCTCGCTGTTTTTTTCTGTATTGTTCTAATTTTTCAGGATCTTCAGACAGCTTAATACGATTCTTTTTGAGATTTTCACGATGTCGTTCTAAGAAAAATGACCTAAATTCCGGATCAGCTTCTAGCCTTAATTTCAGCGACGATAAATACTCTTGTCGAGTAACCTTAAAATCCACCGTACCCTTAACCATCTGATAACGTTGTTTTTCTTTACGGTTATTGCGTTCTTTTTTACAAGCATCAGAACAAGTAAAAG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCATCCGAGTGTAAAAACTCGGCTACATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 31-301 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000056.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 32 ............................ TAATCAATCAGCTAAACCACTTAAACCAAACA 91 28 100.0 32 ............................ GTTAATATGATAATAGATGATACATCAAAAAC 151 28 100.0 34 ............................ CATTTAATTAAAACCCTTCTAGTTAATTGATAAT A [168] 214 28 100.0 32 ............................ TTAGACAATGACTTGTAAACTTTTTCAATTAA 274 28 78.6 0 ....................TA.G.TTG | ========== ====== ====== ====== ============================ ================================== ================== 5 28 95.7 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAAAACCTCAGGTATTAGCCTCTCAAAAAG # Right flank : GTTATTGGCATACTATAAAATATAACTTTACGCTCAAATTGTTATTTTTATTAGAAAAGCCAAACTAAATACGATGCAATTATATTTTGCTGGTATAGATACATTATATTTTCAGTGGAAGACATTCCGTTGATAAGTCATATTATTCATATTGTTAAGAACTTTTCCGTAAACCATTGAAGGTTAAAGCCTTGATGTTTATCATGGGTTTACAAAGGATTTGTAGCTGTTTGGGATGAAACTTTGGATAAAGAAAAATTTAACAATATTGCGAATCATATTTTTAAAGCAGAAGCTGTAAAAGCTGCTGTTTATGATGTGATCACTCAGAGCATGACAGCATATAGAGCAGAGATTGTTCATGGCGTAACCCCTAATACTTTGAATCGTTATGTTAAGAAATTTAATCTTGAATTAGATTATTTACAAAGTATGGGTTTAAAAAATAACATCATAAAGTCCAGTGCTAACTGGACTTTTTTAGTAAATAGAATAATGCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFA01000058.1 Photobacterium aquimaris strain BS-2 CFSAN046811_c_P87_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151 28 100.0 32 ............................ GCGAAATGGCGTGATATTGACTGGGAACTCAA 91 28 100.0 31 ............................ AAAATATACCGACCACAAGAAGCTCTATTCG 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACTTCATTAGCTGAAAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACACCAGCTTTAGCTAATTCACGCATTGCTGCTTGAGTAATCGATGTGCCAGTTCCAAGCATGATGGCGGTCGTGTTTGCTATGGGGATATTCCAATATAAAGATTGCTTACCTTCGTCAGTGACATATTCAACCCGACCACCATTTACTAACACACGACAATGCTGCAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACTATAAAAAAAACGCATTATATACACAGATACGCATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGCTAACCATTCAATCTATATAAAACAACAACTTAAAATATTGGTAAAAAAAAGGGTTTTTGATGGAAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATCGTGCTTCA # Right flank : ATTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //