Array 1 592593-592144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWX010000002.1 Enterobacter roggenkampii strain 12795 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 592592 28 96.4 32 ...................T........ AACCCTTGCGCACCTTGGTGAACAAGCGGTGT 592532 28 100.0 32 ............................ TTCGCAGAATGCGAAGAATCGGAACCAGAAAC 592472 28 100.0 33 ............................ GTATATGAATCCCCCATTTGCCAGGCAAGCGGT 592411 28 100.0 32 ............................ TGAGAAGTACGAAGCAGAGTATGGAAAGACAC 592351 28 100.0 32 ............................ ATGCGCGGACAGAATATGTCAGCAGAAACCGC 592291 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 592231 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [592206] 592171 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.7 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTCTGGTGGATGAAAAAGAGGGTGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAATTAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGAATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 602719-602089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWX010000002.1 Enterobacter roggenkampii strain 12795 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 602718 28 100.0 32 ............................ AATCGCCATTTCGATCCCGGTGCTGGCACCGC 602658 28 100.0 32 ............................ GCTTGCTAACCCCGGCCAGGCGGGGCTGATTC 602598 28 100.0 32 ............................ AGAAATTCATGGGTGAACAAACTAACCCAGGC 602538 28 100.0 32 ............................ AGAATGTGTACGCCAGGCAGTTAGGGGGCTGG 602478 28 100.0 32 ............................ AGGCTGCTCAGGTGCCACAGCAACAGACACCT 602418 28 100.0 33 ............................ GCTTACTGCAGAAGTTAGAAAATGATCCCCGCC 602357 28 100.0 32 ............................ TGCGACAAGTGCCAGATATCAAGCGACTGTGG 602297 28 100.0 32 ............................ CGTGGCCGTGCGGTCACGGCGAAGCATCTGAA 602237 28 100.0 33 ............................ CGTACTCAGGTGAGATTAGTGGCTTCACATCAT 602176 28 100.0 32 ............................ GCGCAGATTGCCGCCCGTCTCGGACGAACAGT 602116 28 75.0 0 ...........C.....T...AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGAGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCACATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTAACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAAAATATTGATTTATATGGTTATAATTTACGTCCCAGAAAAAGGGTTTTATGCGAAAAAGTTGATTATTTTGTTTGCTAACAATAGGATGGCGTTGTTTCCTTTCA # Right flank : AAAACAACTCTCTATAACATTCAGCTTACCTATTTAAAATTTAATACTATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGTGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 619178-617585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWX010000002.1 Enterobacter roggenkampii strain 12795 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 619177 28 100.0 32 ............................ ACGGAATATCCAAATTTCCAGCAGGACTGTAA 619117 28 100.0 33 ............................ TGGAGTACCTGAAGAACCAGAACGACGCATCAA 619056 28 100.0 32 ............................ TCGCCGCCTTTGGCGTTTCAGGAGCATATAAA 618996 28 100.0 32 ............................ CCGGCCCTTCTCGCCGTCCAGTGTCGCCGACA 618936 28 100.0 32 ............................ CAGCGCGGCGAGTTTTATGATTGTTCTTCGTT 618876 28 100.0 32 ............................ ATATTCACCACAGCCGAAATAGCGAATTTTAT 618816 28 100.0 32 ............................ AAATAAGGAGAGCAGTTTTGGTAGTGCTCAGT 618756 28 100.0 32 ............................ AGATGCCTCCGGCGGCGCTACCGCGGGTTGCT 618696 28 100.0 32 ............................ GCCCACGTCGCGCAACCCGCGGTGGCTTTCGT 618636 28 100.0 32 ............................ ATTCTGGTACCCATAAACGAAACCGCCCACGT 618576 28 100.0 32 ............................ GCCAATAGGGCGAAGAGCAGGGAATGACTCAC 618516 28 100.0 32 ............................ GATACCTGGAACAACAACCGGAGGGATTTGAA 618456 28 100.0 32 ............................ ATGATGACCAGCACGGTCTACTGTGTAATAGA 618396 28 100.0 32 ............................ ATAACAGCATGGAACTGAATATAGTCCTTTTT 618336 28 100.0 33 ............................ TGAACGAATTCACACCGCCGCCGATCACAGCGA 618275 28 100.0 33 ............................ GCGCGCAGGCGCGCCGGGCTACCTGCGGCCAGA 618214 28 100.0 32 ............................ CTAAACATTGATGGCAATTCACGAATAAGCCT 618154 28 96.4 33 .......A.................... TCCCATATGTCCATAAATCCACGCAGCGACCTC 618093 28 100.0 32 ............................ GTTATCAGGCTGCCTGTGCAGTATGGTCATCA 618033 28 100.0 32 ............................ AGGAGGAGCACAAGGGGCGGCGACTGAAAGTT 617973 28 100.0 32 ............................ ATGGAGATTCTCAACGACCAGCTAAACCAGGA 617913 28 96.4 32 ..........A................. AGGAACAGGCGTTTATACATCGGCTTGATAAA 617853 28 100.0 32 ............................ TCGTAAACTAATGACCACACTGGAGGGTTTAT 617793 28 100.0 32 ............................ GTGCCTCTGGCTGATGCGCTGGCGCGCATCCT 617733 28 100.0 33 ............................ ATTCCGACAAATCAGTTAACCCTGGTGACGAGC 617672 28 100.0 32 ............................ TCTGTAGCTTGCCGCCAAAAGAAGGCCGACTA 617612 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGCGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAGGTGGTGGCGCCGCTCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAGCACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCTAGCGCTTTCACTTCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //