Array 1 115921-115283 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MZFO01000001.1 Salmonella enterica subsp. enterica serovar Pomona strain 2012K-0680 NODE_1_length_538987_cov_4.55977, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    115920	    29	 100.0	    32	.............................	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA	
    115859	    29	  96.6	    32	............T................	CCGAAATACGATGCCGGAATATCGTAAACGGA	
    115798	    29	 100.0	    32	.............................	GGAGGACGCTACTATCGGATTCGCTCCGGGGA	
    115737	    29	 100.0	    32	.............................	GATTTACTAAGGTCAACAAGGGATTGAATTGG	
    115676	    29	 100.0	    32	.............................	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG	
    115615	    29	 100.0	    32	.............................	GGTGAGAACAGGGTGCATGGGAGGGAATAATT	
    115554	    29	  96.6	    32	.....T.......................	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA	
    115493	    29	 100.0	    32	.............................	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG	
    115432	    29	  96.6	    32	......G......................	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT	
    115371	    29	  93.1	    32	.....A......T................	TACCAACAATTCAGCGTTACGCCAACGGTAAC	
    115310	    28	  82.8	     0	...............A.AA.....G-...	|                               	
==========	======	======	======	=============================	================================	==================
        11	    29	  96.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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