Array 1 64741-63875 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNK01000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE426 426_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64740 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64679 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64618 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64557 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64496 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64434 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64331 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64270 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64209 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64148 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64087 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64026 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63965 29 96.6 32 A............................ AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63904 29 96.6 0 A............................ | A [63877] ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 99.3 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83037-80873 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNK01000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE426 426_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83036 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 82975 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 82914 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 82853 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 82792 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82731 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82670 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82609 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82548 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82487 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82426 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82365 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82304 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82243 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82182 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82121 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82060 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 81999 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81938 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81877 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81816 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81755 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81694 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81633 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81572 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81511 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81450 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81388 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81327 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81266 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81205 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81144 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81083 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81022 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80961 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80900 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //