Array 1 1811410-1808870 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022868.1 Bifidobacterium longum strain Jih1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1811409 36 100.0 28 .................................... AACCTGTTGGCCTGGTCCCAGTCGCTCG 1811345 36 100.0 29 .................................... CATCGCCACAGCAGACGGCTCTGGCGTCG 1811280 36 100.0 28 .................................... TATCACCTGTTGACTGAACTGGCGTTGA 1811216 36 100.0 28 .................................... CTCCGCGCGGTGAGATTCGCTGTAAATC 1811152 36 100.0 28 .................................... GAACGACTGCCAAACGTCCAACTGTACA 1811088 36 100.0 28 .................................... CAACGTGAGCTGGCGTCAATTCTCGGGA 1811024 36 100.0 28 .................................... TCTACCGACGTGATGGGCAACTACACGA 1810960 36 100.0 29 .................................... AATCTCATCATCGATTTTTTCGATGGTGA 1810895 36 100.0 29 .................................... TCGATTACAAACCAACGAGGAAACGCACC 1810830 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 1810766 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 1810702 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 1810638 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 1810574 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 1810510 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 1810446 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 1810382 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1810318 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1810254 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1810190 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1810126 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1810062 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 1809998 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1809933 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 1809869 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 1809805 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 1809741 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 1809676 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 1809611 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 1809547 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1809482 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 1809418 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 1809354 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 1809290 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 1809225 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 1809161 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 1809097 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 1809033 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1808969 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 1808905 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 40 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2026400-2026744 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022868.1 Bifidobacterium longum strain Jih1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 2026400 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 2026466 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [2026472] 2026550 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 2026610 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [2026658] 2026658 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 2026715 27 85.2 0 ..............C.....C....CG | GC,C [2026733,2026737] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //