Array 1 262080-263794 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPWZ01000074.1 Escherichia coli strain RUSPBB288 NODE_472_length_386965_cov_47.244858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 262080 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 262141 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 262202 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 262263 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 262324 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 262385 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 262446 29 96.6 38 ............................N NNNNNNNNNTGGGGGTATGAGAGCGCCGAGCCGTTCGG 262513 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 262574 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 262635 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 262696 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 262757 29 100.0 40 ............................. NNNNNNNNNNTCCCTGTCAGTTGTAATCGATAACGTTGAT 262826 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 262887 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 262948 29 93.1 38 ...........................NN NNNNNNNNGTAGGGGCAATCGAACGATTCTCTGCCGAC 263015 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 263076 29 96.6 39 ............................N NNNNNNNNNGGCGTGGATTGAGGGACGGGTATTTGGTCC 263144 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 263205 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 263266 29 93.1 37 ...........................NN NNNNNNNNCTTGATCACGCTTTTACCGAAGTAATGGT 263332 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 263393 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 263454 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 263515 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 263576 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 263637 29 96.6 39 ............................N NNNNNNNNNAACGCACCTGGCGCGCCACTTTATCAACAA 263705 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 263766 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ======================================== ================== 28 29 98.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279311-279716 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPWZ01000074.1 Escherichia coli strain RUSPBB288 NODE_472_length_386965_cov_47.244858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 279311 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 279372 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 279433 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 279494 29 86.2 35 .........................NNNN NNNNNNCAAATATAAATTCCAGCGTGCTTCATGAA 279558 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 279619 29 96.6 40 ............................N NNNNNNNNNGGCCTATATCTCTAACCGCATCGGGCTGCGC 279688 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 97.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //