Array 1 39-859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTS01000009.1 Campylobacter fetus subsp. fetus strain HC2 NODE_24_length_898_cov_13.0495_ID_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 39 30 100.0 36 .............................. TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG 105 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 171 30 100.0 36 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTGACTTGG 237 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 303 30 100.0 36 .............................. TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC 369 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 435 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 501 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 566 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 632 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 698 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 764 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 830 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 99.7 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : ACTTTACCAATTTCTATTACTACCGCGTTCACCGGTATG # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 38-660 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTS01000013.1 Campylobacter fetus subsp. fetus strain HC2 NODE_27_length_698_cov_18.9921_ID_53, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 102 30 100.0 36 .............................. CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT 168 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 234 30 100.0 36 .............................. TCGAGTATCGGTTTCAATTTTATTCCTTTGTAATTA 300 30 100.0 36 .............................. ACGACTTAGTGCTGTACATTCAAATACAAATAATTT 366 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 432 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 498 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 564 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 631 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : CTCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATGG # Right flank : TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 38-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTS01000007.1 Campylobacter fetus subsp. fetus strain HC2 NODE_34_length_433_cov_15.217_ID_67, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 38 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 102 30 100.0 36 .............................. CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT 168 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 234 30 100.0 36 .............................. TCGAGTATCGGTTTCAATTTTATTCCTTTGTAATTA 300 30 100.0 36 .............................. ACGACTTAGTGCTGTACATTCAAATACAAATAATTT 366 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : CTCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATGG # Right flank : TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1-885 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTS01000030.1 Campylobacter fetus subsp. fetus strain HC2 NODE_7_length_45531_cov_12.0545_ID_13, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 36 .............................. TATTAAAAAATATGATATTGCTTATACTAATATCAA 67 30 100.0 36 .............................. ATTGCCGAAACTAAGCCCTAATTCTACGGCTGCGCG 133 30 100.0 36 .............................. AAATCAAATCCAAAGCGTAGCACCAAAAGAAGCGTA 199 30 100.0 37 .............................. TTTGCCTATGATTGCTATCTTCAAAGTCAATACATCA 266 30 100.0 34 .............................. TCCGGTTCTCCTGGTCCTGGTTCTGATGACAAAA 330 30 100.0 36 .............................. CCGCCATCTGCGAACATTTTTAAGCCTTGCTTCTCT 396 30 100.0 36 .............................. CATCGGATATGGCTTTTTAGTTTCTGCTTTAGAAGA 462 30 100.0 35 .............................. AATTAATAAGGCTAAGCGTGATATGATTTATAAAA 527 30 100.0 38 .............................. ATAGCATCCAAGGCCTTTTTTATCAAAGTAGAATCCGG 595 30 100.0 36 .............................. TACAAAAAAGTTGCATAATCTTAACAACTTATTCGA 661 30 100.0 35 .............................. TTATCTAAAACACTTCCTGCAGATATTTGTATTTC 726 30 100.0 34 .............................. GCGAAGGCGCTATATACGTCGTTAGGTTTGAAAA 790 30 100.0 36 .............................. AGTAAGTGCTGGAGCAATAAGCAGCTTTAAAAAAGG 856 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 37 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : | # Right flank : CTATAATAAACTCATCATCTAAGTAAATTTAAAAAAGCAATTAAGATAAAAAATAAATTAAAAGATATTATCTAAAACTATTAAAAATAGATTATTTGTTATATATATAATATAGCTATAAATAATGAGAATAAATTTATTTTCCAATCTAAATTAAAAAAATAACAATAATAAGTTAAATATCATAGGAACATTAAATTTAAACTATTTATCTATGTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGCAGTATAAAATATAAATTTGTAGTTAGTGGTATATAAATATTATTATTGCTATAAATTAAAACTAACATTAAAATTGAGTTGGGTTATATACAAAACCCCTGGTGCCCAAAGTCGGACTCGAACCGACACACGGTTTCCCGTACCAGATTTTGAGTCTAGCGTGTCTACCAATTTCACCATTTAGGCTTAGAGTAATAAATAACTATAAAATAGAAGTTGGATTATACAAAAAATTATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 617927-619998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTS01000012.1 Campylobacter fetus subsp. fetus strain HC2 NODE_1_length_620031_cov_11.4642_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 617927 30 100.0 36 .............................. AATTTTGTATGAATGCGTTTAACAAAAATATTCCAT 617993 30 100.0 36 .............................. AAATTAATAAATATAATAAGCGATAAGGAGATTTAA 618059 30 100.0 36 .............................. AGAATGGATTCCATTTTGCGCGAGCTTGTATTTCGA 618125 30 100.0 35 .............................. CTTAAAAGTAAAATAGCAAAGACAAAAAGCAAAGA 618190 30 100.0 36 .............................. AGAGTGGGCTCCATTTTACTCAGATATGTATTTCAA 618256 30 100.0 35 .............................. GAAGATTCAGAAGTTGTAAACACATACGGATTCGA 618321 30 100.0 35 .............................. AAAGTTTAAAACAGTTGAAATGAGCTTAATAGAGT 618386 30 100.0 36 .............................. TAATCTATACTTTAAAATTATGGAAGAAGATTACGA 618452 30 100.0 36 .............................. GAGCTTTAGGTATTGATCCAAATACATTTTATCAGA 618518 30 100.0 36 .............................. TGCATCTCTTACTATCTCCTTGCAACACCTAAAAGT 618584 30 100.0 36 .............................. ATAAATGGCAGATCAAGTATATGATATGCTAAATGG 618650 30 100.0 36 .............................. TATTAGGGTATCTTTTGCTTCATCGTAATCTTCTCC 618716 30 100.0 36 .............................. GTGTACAAGAACTTGCTTTGTAAAATTTTGATTATC 618782 30 100.0 37 .............................. AGAACAAGAAGCAAAAGAGCAAGTAAAGGCTAAAAAA 618849 30 100.0 37 .............................. ATATTATATTAAATGGTTTTAGTATAGATTATAAAGG 618916 30 100.0 36 .............................. ATATGAAAGGCGGATCACAATATCGTGTTTTAATGA 618982 30 100.0 36 .............................. TATAGAACTTTTTGTTGATTTTCAAAACGGTAAAAA 619048 30 100.0 35 .............................. AAATAATACGTATAGTATCACCGTCTTTGTAGCAA 619113 30 100.0 36 .............................. CGCGCAATGGGATATTAAAATCGAGCTTGAAAAAAG 619179 30 100.0 37 .............................. ATAACTTAGATTTAACTGCAGATTTTACCATATCCCC 619246 30 100.0 36 .............................. TATTAAAAAATATGATATTGCTTATACTAATATCAA 619312 30 100.0 36 .............................. ATTGCCGAAACTAAGCCCTAATTCTACGGCTGCGCC 619378 30 100.0 36 .............................. AAATCAAATCCAAAGCGTAGCACCAAAAGAAGCGTA 619444 30 100.0 37 .............................. TTTGCCTATGATTGCTATCTTCAAAGTCAATACATCA 619511 30 100.0 34 .............................. TCCGGTTCTCCTGGTCCTGGTTCTGATGACAAAA 619575 30 100.0 36 .............................. CCGCCATCTGCGAACATTTTTAAGCCTTGCTTCTCT 619641 30 100.0 36 .............................. CATCGGATATGGCTTTTTAGTTTCTGCTTTAGAAGA 619707 30 100.0 36 .............................. TATTAAAAAATATGATATTGCTTATACTAATATCAA 619773 30 100.0 36 .............................. CAACCCTGGTGCCGGTGTCGGTTCTCCTGGTTCTAA 619839 30 100.0 35 .............................. CCATACGTCAAAATGCCTTTTGGAATATCTAAAAA 619904 30 100.0 35 .............................. TAAGAGCCGTTTATACCTTGTAAGTGTTTTGGCGG 619969 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 100.0 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : GGAATTTTAGTTATTTTTGAGAGCGTTTTATCATTTATGCTATCTTTTTCTTTTGCACAGATATCTAAAATCTCTTTTGCGCTAAATTGCGCTATAAAATCATATAGCTTTTTTCTATGCCCCTTCCCATTTTTCCAGCCATACAGGGTGCCTGGCGAAATGCCTATTGCGCCTACTACTTCTTTATCTAGCAAAGGAATTATAGGAGTTTTGGCCCCAAAATTCTCTATTAAAAATTCCGGGTCTAAATTTTTAAAGAAAAGATATATATCTTTTTTGTAACCATCAGACCTCTTCCAACCGGCTATCGTCCCGCAAGGGATTTTTGTTATTTCAGATAGCCGTTTATCTGTTAATTTTTTTATCATTTTAATCCTTTTTTAAGTTTATTTTAAAAGTTTGCAGATATAATGCAAATATTAAATATATTGCTACAGACAATTTTGTGTTAAAAATTAGCAAACAACAACGTTATTAATTTTTATACTTCCAATACCGCC # Right flank : TATAATAAACTCATCATCTAAGTAAATTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //