Array 1 1040611-1033060 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGY01000001.1 Pedobacter steynii strain DSM 19110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1040610 44 78.3 30 ...A......T....T..C....T.--....T.C..........A. ACAGGAGTCGTCGTACGCAAACCCAGAACC 1040536 46 97.8 30 ..................C........................... ATCTTCAAGAGCTGAACGATTGGAATATAG 1040460 46 100.0 29 .............................................. TCTTCATGTCTTTAATGTTTTATACCTAT 1040385 46 100.0 30 .............................................. TGTTTTCTACTACCACAGCCCCAATGCTGG 1040309 46 100.0 30 .............................................. AAGCATTACCAGCTGGTTAATACCATACGT 1040233 46 100.0 30 .............................................. AAATGGGTTTTACTTGTACCCAAGAGATCC 1040157 46 100.0 30 .............................................. CTGACTTCCTTAAATCGGAAGTGATTTACC 1040081 46 100.0 29 .............................................. CTGTACTGCTAATTCCGGCACCTCCCCAT 1040006 46 100.0 30 .............................................. GACCCAGTGAAATATAATCACATATTTGCA 1039930 46 100.0 30 .............................................. TGATGGTTTGCTAGATGTTAATCGATTAGA 1039854 46 100.0 30 .............................................. CCCATTCACTTTTTTTGATATCATCACTCT 1039778 46 100.0 30 .............................................. GTAGCGGTATTGTATAGTTGACTTTCGTTG 1039702 46 100.0 30 .............................................. ATATGCCTTAGGAAGCTCGTACGCTAACCA 1039626 46 100.0 30 .............................................. CTTATCTGGCCTTATATCATACTCGAATCC 1039550 46 100.0 30 .............................................. TTACCTTTGTGCATATACTTAGTTGTATAA 1039474 46 100.0 30 .............................................. TTTCGAGTAGCGGGGCTGCGGCGGTAGATG 1039398 46 100.0 30 .............................................. CACCAGCAATAATACTATCGTCATCATCTA 1039322 46 100.0 30 .............................................. GCAGCAGGAGAAGGAATAGAACAACCACTA 1039246 46 100.0 30 .............................................. GCCCTTGCGCGTGGATCGCGCATTGCTTCA 1039170 46 100.0 30 .............................................. CTAGATGAAATGTACACACAATTATCACTA 1039094 46 100.0 30 .............................................. ACTTCATAGCTATGGGAAGCTACAGACTAA 1039018 46 100.0 29 .............................................. TATGGATCGGAAACAAAAAACAAAACGGA 1038943 46 100.0 30 .............................................. AATACAATCACATATTCGCGCAAACCTCAA 1038867 46 100.0 30 .............................................. TGTTAGGCCTACCAGGCGACACATTCGATA 1038791 46 100.0 30 .............................................. GCAGCAGGAGAAGGAATAGAACAACCGCTA 1038715 46 100.0 30 .............................................. TCTCTCTTGACATATTATGCCGTATTGACA 1038639 46 100.0 29 .............................................. ACAGTTATACGTACTACAATGGTAAAGCG 1038564 46 100.0 30 .............................................. CCCTTTATTGTTCAAAGTCAATTCCATAGC 1038488 46 100.0 29 .............................................. TATTTTATACATAATAACACAATACCACA 1038413 46 100.0 30 .............................................. CTTATGCGATGGTTGCACGGAGGCAGAATG 1038337 46 100.0 30 .............................................. ATTGAGCCGGGGGATGATGATAACGCATTG 1038261 46 100.0 30 .............................................. TCCAATTGCAATTACCTTTGCATGAGTAGT 1038185 46 100.0 30 .............................................. CATTTTTTTGACGCTCATACATTTCTTCCT 1038109 46 100.0 30 .............................................. CTGAGGCCTTCTTCCGTCCATTTGCAAGAG 1038033 46 100.0 30 .............................................. AAATGGGCATCCATGAATAACAATTTGATA 1037957 46 100.0 30 .............................................. TTGATCCAAGCGACTTGTCTTGAACTACCG 1037881 46 100.0 30 .............................................. CATATTTGATTTTATTTAAAAACTTGCCAG 1037805 46 100.0 30 .............................................. TTTTACAGCTGAATAATAACTAGTTTTGGT 1037729 46 100.0 29 .............................................. TGGGATATATATAAAAACTACTACGCAAA 1037654 46 100.0 30 .............................................. TGAATACATCTAGTTGTACTTTGAATGATC 1037578 46 100.0 29 .............................................. GGAAAGAAGAATACTACAAACTACTAGAG 1037503 46 100.0 29 .............................................. CAAAAGAAAACAATAGAAGAGTTCAATAA 1037428 46 100.0 30 .............................................. TCTATAGAAATAAACGAAAGTATAGAAGGA 1037352 46 100.0 30 .............................................. TGGTTATCAGTATACCCAACTGGAGGAACA 1037276 46 100.0 30 .............................................. CAATACTAACAATGCAAGCACCAGTAGTGG 1037200 46 100.0 29 .............................................. TCTGGAAAGAACATAAATTATTCATGTGA 1037125 46 100.0 31 .............................................. GCAATAGCAAGTAACGAAATGTTTATGACAC 1037048 46 100.0 30 .............................................. AAACGGTAGCTTCATAACACTAGGAAGCTA 1036972 46 100.0 30 .............................................. CGGCTGATTTAAGCGGAGCAACAGCCGCAA 1036896 46 100.0 30 .............................................. TGCTCATAAGTTTGGGGCCGAAGAGGCCCC 1036820 46 100.0 29 .............................................. ACAGTAAACTATATAGTGAAATACATTCA 1036745 46 100.0 30 .............................................. AAAGAACTGGATAGAATAAGAGAAAAATGT 1036669 46 100.0 30 .............................................. AGAGACGTACAAGCAATAAAAGACCATAGA 1036593 46 100.0 29 .............................................. AACGGTAGCTTCATAACACTAGGAAGCTA 1036518 46 100.0 29 .............................................. CCCACTACAAAACATAGACACTATGAGGG 1036443 46 100.0 29 .............................................. ATATCGTATGCTGCTTGCACTCCTTCTTT 1036368 46 100.0 30 .............................................. ACGAAAGCCCCAGATAGAAGCGCGGCGCTG 1036292 46 100.0 30 .............................................. CCTTGATTTGTTTGTCAGAAAACGACGTTG 1036216 46 100.0 30 .............................................. ATCAACAGAAGAAGGGAAAGAAGAATACTA 1036140 46 100.0 30 .............................................. CTTTTGTAAAACAAAAGAAGCGAAAAAAGG 1036064 46 100.0 30 .............................................. CCTATAGAAATAAACGAAAGTATAGAAGGA 1035988 46 100.0 30 .............................................. TAAGGGAAAATTTTAAATCATGCGAGAGAT 1035912 46 100.0 30 .............................................. TATTTGACAGTGTATGAAATTGAAGCTCCT 1035836 46 100.0 30 .............................................. AACCAAAGGCAAAAACCGGCACTGATGATT 1035760 46 100.0 30 .............................................. TTGGAAACCAAAATGATTGCGATTAATGAG 1035684 46 100.0 30 .............................................. GGAATATCAAAAGAATCGCCATGGTACATA 1035608 46 100.0 30 .............................................. GGCCCTGGCTTACTTACATCTTGTTTATCG 1035532 46 100.0 30 .............................................. TATCAAAGTGATCTATTCAACAACTGGATG 1035456 46 100.0 30 .............................................. AGAAAGCAACAAAACAATACAAGAAAAAAT 1035380 46 100.0 30 .............................................. ATGATAGCAATCATAGGAGCAGTAACAAAC 1035304 46 100.0 30 .............................................. AAGTACTTTGTGTATGATGGCACCATCATT 1035228 46 100.0 30 .............................................. TGAATTGGACTCCAAAGATAAAACCAGGAT 1035152 46 100.0 30 .............................................. CTTTGATACCAGAGAGCGTTAATGATGGGG 1035076 46 100.0 30 .............................................. CAGCAAAGGGATTTACTTATAAAGTAGAGT 1035000 46 100.0 30 .............................................. TCAATTCACGATTTCATTTGACTGAAACTC 1034924 46 100.0 30 .............................................. ACTTCATACAATACCCATCCCATGTTAACA 1034848 46 100.0 30 .............................................. GCGGATATCTTTTAGAGTGGGGATTGGCTA 1034772 46 100.0 30 .............................................. TCTGGTGATCAATGGGAAATAGTCACAACA 1034696 46 100.0 29 .............................................. TGCTTATTGGAGTTGCTGTTATGGCGCTT 1034621 46 100.0 30 .............................................. ATATGCTAAACAAAGAAAGTCATTCACACA 1034545 46 100.0 29 .............................................. GTAATGTGAACACACCAACACATGAACGC 1034470 46 100.0 30 .............................................. CTAAAATGGAAAATGGAAGGAGCCGTAATA 1034394 46 100.0 30 .............................................. GATCCGGTAAAATACAACCACATCTTCGCG 1034318 46 100.0 30 .............................................. CTAACATACAGGAACAGATTTCTTATGAAG 1034242 46 100.0 30 .............................................. TAGATCAATGTTGCTAGTTGTAGTGAAAGT 1034166 46 100.0 30 .............................................. CATTCCTTGCTTCACCATTGATGAAAGTAT 1034090 46 100.0 30 .............................................. CAGCAACCGGGTTTAGCAATATCTATCTGA 1034014 46 100.0 30 .............................................. TTAATTAATCATTTTAAAACTTATTGTTAT 1033938 46 100.0 30 .............................................. CTCCCGATCTTATTTTTCTTCTTCATGCCA 1033862 46 100.0 30 .............................................. TAGTTGCGGAAAACTCTCGTTTAACGATTG 1033786 46 100.0 30 .............................................. TACCCGAAAGAGATACAGCATGTTATTTTA 1033710 46 100.0 30 .............................................. TATTCCTACTGAAAAACTGCCAACTGATTT 1033634 46 100.0 29 .............................................. AACAACACAGGCTGAAAGATTTCTATCTA 1033559 46 100.0 30 .............................................. TCAGTTTTGTTGGAATTTGTTAGAAACAGT 1033483 46 100.0 29 .............................................. AAGCAATGGTATAGCCTTTTTATTGGCTA 1033408 46 100.0 30 .............................................. TAAATTAAATAACATGAACGAATCAGCATT 1033332 46 100.0 29 .............................................. TACGTCGGAGGTAGACACGAGGACAACCC 1033257 46 100.0 30 .............................................. GACCTTTTAGCGGAAATAGACGGGAGCTGG 1033181 46 100.0 30 .............................................. CAATGCAATATTGATCAGGGTTAAGGCTGG 1033105 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 100 46 99.8 30 GTTGTGATTTGCTTTCACTCTTTGAACTACTGATATTTACAACACC # Left flank : ATTGGTTAGGAAATGAAGAAGACTCTATTAATATTCAAGAGATTATTCGGAAACTCAATTTATATAAAACGTTCCTTTCAGAGGTTAGACTAAAAAAAATCACCACGGTCTAACAATTTAATATTGCGTTTCAATCGTAAAGAATTCAATGCTTTATCTGATTTGTATGCACTATTTAAGGAATTAAAATTGGTATAGTACCCCATCAATAAACCATGTTAATTTCGCGCTATTCGGGAGTCGAATATCAAAATCTATTCAGGTATTGTAAAATCGTTGATTTTTGCACAAGGTGCAAATCCCAGAGGGATCACCAAATTTAGAATCAAAAACTTATACCCCCTTTGCAAACAAAAATGTTAGCAGGGGGTATTTTTTCAGGGATACTAAAAATTGTACCGATTCCAAAAAGGCAGTATCCAAAAAATAATTCGGTGAGTAGTTTTAAGAATCTCCCCTACTCACTGACAGAGGCATAACCAACCACCGAAAGCGTTGAA # Right flank : ACCAAATAGCACAACAAGCTATAATTCAGTAGGTTAAACAAGAAATTAGAATTAAAAAAATCCGGACACAAATGTGTCCGGATTTTTATTCTAAGTATTTTTTGTTATTGTAATATTCGTATTTTAGAATAATTCGAGCTGTTGAGGAGTATCTGGCAATGCTTTTTCGTTCTTTCCATAAAATAATTCCATCATACCAAACTGTTTGTCTGTTATGGTCATAATACCAATATGACCTTTCTCAGGCAACAATCGTTTAACCCGATTAATATGTACATCTGCATTCTCCCTGCTACTACAATGTCTCAGATAAATGGAAAACTGAAACATTGCAAACCCATCCCTTAAAATTTCCTTACGAAATTTAGAAGCAATACTTCGTTCTTTTTTAGTTTCGGTTGGCAGATCAAAAAAAACTAATACCCACAAAATTCGATATTCATTTAAACGCATCAATTAAAATAGCAATTCATCAAAAGCTTCTTGCTCCGATCGGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCACTCTTTGAACTACTGATATTTACAACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //