Array 1 53611-51942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANNY010000005.1 Streptomyces sp. CAI-78 NODE_5_length_130700_cov_541.464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 53610 37 100.0 36 ..................................... CGCGCCCGTGCTCCCGAGCGTGAGCGCGGAACGGTG 53537 37 100.0 37 ..................................... CCGAGGACCCGGCCGCCCGCTGGTGGGCGGACCTTGC 53463 37 100.0 36 ..................................... TTCATGCGGTCCTCCTGGCGGTGGTTGGGGCGGGGC 53390 37 100.0 35 ..................................... GACTCCACCAAAGAAGCCCTGTCCGCCGCGGACGA 53318 37 100.0 36 ..................................... ACCATGGGGTTGCTCCTTGTGAAGGGGGCACTTGAT 53245 37 100.0 36 ..................................... GACCTCGCGGTCGACGCCTCGGAGATCGACTTCCTC 53172 37 100.0 37 ..................................... GCCGCTGGCCGTTGAGGACGCGCACGACAGCGAGGCG 53098 37 100.0 38 ..................................... TGGCTGAACACCTGCCCCAGCCCCGGGGGCGCGTCCTG 53023 37 100.0 35 ..................................... ACGGTCGGTCCTTTCGGGGCCGGGCCGGGCGGACG 52951 37 100.0 36 ..................................... ACCGTCGACCAGGTCGCCCGCGACGCACAGCAGGAC 52878 37 100.0 37 ..................................... ATGGAGTGGTCGGCGCTGTTTGCCGGAGCAGATCGGG 52804 37 100.0 36 ..................................... GTCGGGTACGGCGGAGGCAATGAGGCCGCCGGCGAC 52731 37 100.0 36 ..................................... CAGCTCTACCCGCAGCACCAGGCGGTGTGGGACACC 52658 37 94.6 37 ............T.....................T.. CCCTGCACGTCCCCCGAAGACTGGCAGCGCGGCCCGC 52584 37 100.0 36 ..................................... CCCACCCCTGTGAGGGCCGCTGCTGGAAGAGGCCGA 52511 37 97.3 37 ...A................................. TCCATCAAGGCGGGCAGCTCGCCGTCCTGGGCCGCGA 52437 37 100.0 36 ..................................... AACCTGATGTTCCCGGCCGGCGCGCTGCAGCGGGTG G [52417] 52363 37 97.3 36 ............T........................ GTCGGCGCCGCCGGTGAGGGTCGCCAGCGCGCTGCT 52290 37 94.6 36 ..............T..............G....... CGCGCGGTCGAGCTGCCGGGCAGCGGCACGGAGGGG 52217 37 94.6 39 ..............T.......A.............. ATCGGCAGCGTGACCAGCGGAGAACTACGCGAGCCGGGT 52141 36 94.6 36 ...................-..A.............. CGCGTCGCCGGGCACAGGGCCGGGGAGACCCGGCTC 52069 37 97.3 54 .............................G....... GCTTCGGCGGGGCCGGGAACTTCGTCGGACAGGGCAGCTCCCTGCGCCTGCCGG 51978 37 81.1 0 A.........T.......A..AA.T...........A | ========== ====== ====== ====== ===================================== ====================================================== ================== 23 37 97.9 37 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CGCCACCCGGGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACACCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCAGCCCCGAACACCTCACCGAACCCCCGCGCCAGACCAGCCGAACCCCGCAGGTGATCCACCAGCAGATGCCGCACACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCAACATCCCGGCCCCCTCATCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACAACCCAGACCACCCCGAAGCGACCAGCCAGACCGCCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAAGGAAAATGTCAGATTTGCTCGAAATCGGGCCTCGCTTAACTGCTGGCCGAGAGCACGCAGACAGACAAACCCCTGACCAACCAGG # Right flank : GGCTGAGCTTCACGGCCTTTCAGCACCTCGCACAACCCTTAGAATCTCACACTATGCGACGCTATAGACACTCAAAGCAGCGGGTGCCGACGGGCCGCCCGTACCTTCTGCGGGAGGTCTATGACAAAACCCCCAGCATCGACGACCGAATCTGCGCTCTCCCCGACCCCGCCGACCCCACCGAGTACGAGGCCATCGCGGACGCCCTGTGGGACCTGTTCCTGTCCACGAGGAATCTGGCGGAGCAGCGCAGCGGCACCGGTTGCACGCGTCATCCCGATGGGCCTGTCGACACCGAAGCCCCGGAGGACTGGGGGTTCTGCTTGCTCTGCAACACCAACCGGCGTCGGGGACAGCCCAGTTCGACCGCGGCGGAGAAGCCGCCCAAGCACGTCTGGGCCGTTCCGCCCCCTCCCTACACCCACGGGGCGCTTCTCCAGACGCGCCGAGCGCTGAACGACGCGCTCCTCGAACTCAACTACCGGGCCCCGGACGCTTCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 59939-60561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANNY010000005.1 Streptomyces sp. CAI-78 NODE_5_length_130700_cov_541.464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 59939 37 100.0 36 ..................................... ACTTTCCGTGGGGTGGTGCGGTCACCGGCCCCGGGT 60012 37 100.0 35 ..................................... CGCACCAAGCGGACCGAGCGTCGCGTCAACGCCGC 60084 37 100.0 36 ..................................... CCAGAAGCGGCGGGGGTTGAGCTGGTAGGTGCCCGA 60157 37 97.3 37 ..............T...................... GACGTGACGGTGATCGACGCCTCGCGGACGATGAGCC 60231 37 100.0 36 ..................................... ACCGCCGACGACGGGGCAGCCTCCGTCGCCGTCCTC 60304 37 97.3 35 ..........................G.......... GTCGACGACTGCGTCGGCTACGAGCAGCTGGTGGA 60376 37 100.0 36 ..................................... ACCGGCATCGCCCAGGAGGCGAGGAGCGCCGGTGTC 60449 37 97.3 39 ...............T..................... CTCGCTCACGTAGATCCGGTCGATCCGCGAGTCCGGGCC 60525 37 94.6 0 ..............TT..................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.5 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : GGCGTGGCGCGAGCGCAGCGAAGCCGACGACAGCGACGCCAAGGGCAAAGAGACCGAGATGGGCTCCAAGTACGTCGTCCCCTACGCCCTCTACCGCGGCACCGGACACTTCAGCGCCCCCCTCGCCCACCGCACCGGCGTCACCAGCGACGACCTCGCCCTCTTCTGGCGCGCCTTCGAGATCATGCTCGAACACGACCGCGCAGCCGCCCGCGCCAACCTCGCCCTGCGCGGCCTGTACGTCTTCACCCACGACGACGCCTTCGGCCGCGCCCCTTCCCACGAACTCTTCGACCGCATCACCGTCAAAGCCCGCGGCGACGCCAACGCCCGAACCTTCACCGACTACGGAACCGTCGAAATCCGCGACACCGACCTCCCGCCCGGCATCACCCTGACCACCCTCCTCCCGCGCACCACCGGATGACAACCCCACATACCAGCCCAGGCGGAGAGCGCGAACCCACCCAGATCATGCTCTCCGCCCGACACCCCCGGCA # Right flank : CCGGACCCACTCGGGGTCGAGGCCGCCGAACTCATTGGGTGGCGGTCGCCCTCCGGGGGCGAGGACGGCGTCACCCAGAAATCGATCGCCGAAGCCCTCGACCTCCATCGCGGCAGCCTGAACCACAAGATCCGGACCTACCGACAGACGGGTCGCTGGGTCGGTGTGCGTCAGCAGCGGGGGAGTATCTCCGAAGCCGACGCCGAGCTGCTGTGCAGCCTGCCCGCCCCACGGCAGGGGGAGAAGGTGCTGGAGCTCTTGGAAGAGGCGACCTCCGGTGCCATCGTGAAGGGCCTCGGGACCACGGCGAACGGCCTCAAGACAAGCGTCGCGGAGTACCGGGACACGGGTCGGTGGACTCCCCCCAGGCGCATGATCTCGAAGGCCGAGGCCCTGCGCCTGCGGGGAACTCCGGTGCCCCAGCAGGGCGGGCAGATTGAAAAGCTGCTCGCCGCCAACGTCAAGCTGATTTCCATCGCCCACGCCCTCGACCTGCGTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //