Array 1 327491-328977 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBY01000002.1 Streptococcus mutans strain UAB-21 NODE_2_length_352639_cov_45.2951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 327491 36 100.0 30 .................................... GAGGCACGTATAGAGAAGACATTCTCTTCA 327557 36 100.0 30 .................................... TCTGTACTCTCCATCCTTTGGGCCTTCTAT 327623 36 100.0 29 .................................... GAATGGAGATGTCTTATATGTTGGTTCAT 327688 36 100.0 30 .................................... AAAAATAGCGATTGACACGCTAGAAGCTTC 327754 36 100.0 30 .................................... GTCAAACTGATTGGACAAGTAAACAGTTTG 327820 36 100.0 30 .................................... GATTTGCACTTTTTAATAACGCTGCTTATG 327886 36 100.0 30 .................................... TCGTACTTACGGACAAGGCTTGTGAAGTCA 327952 36 100.0 30 .................................... GTCAAACTGATTGGACAAGTAAACAGTTTG 328018 36 100.0 30 .................................... TTACAGCTAAGACTAATGCTAAAGCGACAG 328084 36 100.0 30 .................................... TCCATGGAGCGTTGACTTCACTTAAAACTT 328150 36 100.0 30 .................................... AATATAGCCCGTATGACCATAGCTATGACC 328216 36 100.0 30 .................................... ATTCTGGCCATAAATCACTGCATGCTATTG 328282 36 100.0 30 .................................... TAAAATCCAAAACTTACGTCCTTTCCATTT 328348 36 100.0 30 .................................... TATATTCCATTTCCATGAAATTTCCAATCT 328414 36 100.0 30 .................................... CTCACTTCTATGTTGCATATGCAGATGATG 328480 36 100.0 30 .................................... CAAGTGTTTTTTTAAGTTTTTAGCAAAATA 328546 36 100.0 30 .................................... ACGGCTCTGCTCCTGCACAGATCGTGGTCA 328612 36 100.0 30 .................................... CGTTCTTCGGTTATGACTCTTACGGTCTGA 328678 36 100.0 30 .................................... AATTCCTTTGATTACTTTCGAGGCAATGAA 328744 36 100.0 30 .................................... AAAATCAGACGCAGAGTCACGCAGACAATC 328810 36 100.0 30 .................................... TTCGACAACAAGCAAAGACACGAGTTGTTT 328876 36 100.0 30 .................................... ATAAAAGTCGATCAAAACGTCTATCTTTAA 328942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : CAAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21218-23561 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBY01000008.1 Streptococcus mutans strain UAB-21 NODE_8_length_25060_cov_46.3048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21218 32 100.0 34 ................................ TGTTTGATGCGTATACTTGTTTTCTGTTTCTATC 21284 32 100.0 34 ................................ ACCACTTCGCCTTGCGCTAATGTTTAATACTGGT 21350 32 100.0 33 ................................ TTTTCGACAGCTAAGGCTGTTACATAATCACGT 21415 32 100.0 34 ................................ ACAAGCAATTCTAGGCTATGTCGAAAACTCAGAA 21481 32 100.0 33 ................................ AAGGTGGAGCGCAAGCGTAAGCTAGTTGATTAG 21546 32 100.0 34 ................................ TTTTGGAAATCGCTCAACAGCTTATCTTTATAAC 21612 32 100.0 35 ................................ AAAATTTCTTGCACAACTGATACGTTATCGTCTAG 21679 32 100.0 33 ................................ AATACCCTCCCTTGCTCCTTGAGTACTTCTTCA 21744 32 100.0 33 ................................ CTATAATTTTTGAATGAAAAAGCGTCGCCTTTT 21809 32 100.0 33 ................................ TTCGATTATCGTCAACCGCCGTTCCGCGTTTGC 21874 32 100.0 34 ................................ AAAAGCTTTTGGCGGGTCTCAGAAAGAGGCTAAG 21940 32 100.0 35 ................................ AGGTACAGGGTTCTTTCCAAGTCTGGTTGAAGCAA 22007 32 100.0 34 ................................ TTAGCAAACAAATCAACTAGATAGCTATAAAAAT 22073 32 100.0 34 ................................ AACGAAAATCATTGAACGTGTGCGCGATTATACG 22139 32 100.0 35 ................................ TTGTCAGCTCTTGCATTACAGTTGCTGTAGTTACT 22206 32 100.0 34 ................................ AAGGTGGAGCGCAAGCGTAAGCTAGTTGATTAGA 22272 32 100.0 36 ................................ TATGATTGTCAATCGTCGTTCAGCATTAGCAACACG 22340 32 100.0 33 ................................ ATATCTTCTTTATCCTCTCGTCCATTTTTTCGA 22405 32 100.0 34 ................................ ACGCTGTCTTTTTTGCCATTGACGACTTCATGCA 22471 32 100.0 35 ................................ AAGTACATGTATAGTCTTAGTGACTGTGTCAGACT 22538 32 100.0 36 ................................ AAAAAATACTCGCGTTTCTTTTTTTGCTCAAGTAAG 22606 32 100.0 34 ................................ ATTTTTCTAATGCCTCCTCAATTGTAAACTCAAT 22672 32 100.0 35 ................................ ATTTGTCGCAATTCAGCTTCATCCCTTGGGAACAG 22739 32 100.0 35 ................................ TGTTCCTAAATCATCTAAAACTAAGTAATCCAAAC 22806 32 100.0 33 ................................ AATTCTTCTTCGACTTCTTCCGCTGATAGCCGT 22871 32 100.0 32 ................................ ATCAAATCTTCGTCTGTATAATCTTTTAGCGC 22935 32 100.0 34 ................................ AACATAGCCTAAAATAGCTTGAGAATACTCAAAA 23001 32 100.0 34 ................................ TGTTAGCTCGAACTCGTGTAATGCAGGTTTAGCA 23067 32 100.0 35 ................................ ACTGAATAGTTCAGAAGCCAATTCTGTCGTGACTA 23134 32 100.0 34 ................................ TTCTGACTAGTTGTATAATTATCAAAAAAGAGCT 23200 32 100.0 33 ................................ ACGCGGGTTCCGGGCTTTTTTAAAAGAGACCGG 23265 32 100.0 36 ................................ AAAACGATATTGGAACAACAATTACGACTCCAACAG 23333 32 100.0 34 ................................ TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA 23399 32 100.0 33 ................................ AATTATGAAAGCTCAGTATGGACAACTTGATAA 23464 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 23530 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTCAGCAGGTGGGTGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //