Array 1 1-245 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831923.1 Rothia sp. HMSC064F07 Scaffold58, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 1 25 100.0 48 ......................... GAGGGTTAGGTAGACACCAATGACCTGGGCGAAATCAATCCCATTTCC 74 25 100.0 45 ......................... GAGGGCTGACGTTGACCGCGTAACCATCCTGCACACGAAATTTCC 144 25 100.0 52 ......................... GAGGGCTGCTGAACATTCCCAACAAATTTATTCGCGACGAGTTGAGATTTCC 221 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ==================================================== ================== 4 25 100.0 49 CTTCCTTTTCGGAGGGACTTTCATT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTTTTCGGAGGGACTTTCATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 56064-56460 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831928.1 Rothia sp. HMSC064F07 Scaffold208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 56064 36 100.0 37 .................................... CACCGACCACCCCCGCCCCCTATATGCCAAAACCACC 56137 36 100.0 36 .................................... ACCCAGCTCTAAAAGGCGGGCGCGTACCTCATCTTC 56209 36 100.0 36 .................................... AACCTCGACAATAGGCACGCCGGGGTAGGTATCGCT 56281 36 97.2 37 A................................... AGCGGGGGTTCTGGTAGGCGTCGATGACCACTCGGCT 56354 36 100.0 35 .................................... TAAGTACGGTTTTTTTGTCGAATCCTGGGCACACG 56425 36 80.6 0 .............................NNNNNNN | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 96.3 36 GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Left flank : CAATATCTGTGCCTACCGCAGCATCGTCATCCGAAGGCGGAGAAATCTGAGCTCCAGTCGTATGGGCGGACTGCCTGGGTCGCGCCTCAAGGAAAGTCCCCGCCCCCGAAAGCAGGGAAATAATGCGCAAGCTCTGGAGTGCCGCGAACGTTAAGGTACCTCAATGAAAGTCCCCGCCCTAAGGCGGGGAAATCTCCGTGTTCTCGCACGAACTGTGCCGTTTCGCGCCAGGGCGCCTCAATGAAAGTCCCCGCCCGAAGGCGGGGAAATTTGTGGTCCCCTGACGGCTGGAACGGATCGCCGGACGGCCTCAATGAAAGTCCCCACCCGAAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCCACCCGAAGGCGGGGAAATGTGGTGCTGAGGTCTTCGGTAATGAAGCCCATTAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCCACCCGAAGGCGGGGAAATGCGGCCTCCTTTCCCACGTGGCGAGGGTACGCGGCGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATCGAACATTCGTCGCCAAACGCTCAACAAGCTGTGCGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATCTCAAACCCCCTCACTGACCACCCCCGCCCCCCAAGCCTCAATGAAAGTCCCCACCCGAAGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCCACCCGAAGGCGGGGAAATTTCGCATCAGGCCGCAGCTCCTCGCTTGGCGGCTTCGCCT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 57759-56884 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831928.1 Rothia sp. HMSC064F07 Scaffold208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 57758 36 80.6 39 NNNNNNN............................. GCCAAGACTGCACGCACTCAAGACGTTCAAGCTTTGCAA 57683 36 100.0 36 .................................... ATTGGTTGGGGTCGAGAATGAGGGTTATCCGTTCTG 57611 36 100.0 35 .................................... CCACGTCCACCGCCACACAAGCGTGCCGCCCGCCT 57540 36 100.0 35 .................................... TGACAATGTGAGCAGCGAAAGCATTAAGAATTGCT 57469 36 100.0 35 .................................... TGGTGCTGAAAGACTCCATGCTTTCCCAGAATTGG 57398 36 100.0 37 .................................... TCTGCGTTGTCACCGTGTCCTGGGTGAGAGAGTAGGT 57325 36 100.0 36 .................................... CAGAATGGGCTCAACGTTGGGAGGAGGCAAACCCAA 57253 36 80.6 86 .............................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 57131 36 80.6 34 NNNNNNN............................. GCGCAACAGCCACACCAGGCACGATGATTACGGA 57061 36 100.0 34 .................................... CTTTTGGACCTGGCGAAAACACCCATTGGCCGCA 56991 36 100.0 36 .................................... GAAGCCGCCAAGCGAGGAGCTGCGGCCTGATGCGAA 56919 36 80.6 0 .............................NNNNNNN | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 12 36 93.5 40 ATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGC # Left flank : TGCACTGTGGCGTTTGAAATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGACACACAGGACTGCACGTCAATTCTTGGACTTCCGGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCCCCGCTGATTTTCCCGGCGTTCGCGCTTGGTGTCGCATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCCGAGCTTCGGCCTTATTCTGACTAAACGAATTATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTCCCGCCGTGTAGCTAGGGAAAAAGCCCTAGATGCGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCCCGCCGGTGAGCCCATTCTGATATGATGGTCTCAATATTTCCCCGCCTTCGGGTGGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTTGGGGGGCGGGGGTGGTCAGTGAGGGGGTTTGAGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCACAGCTTGTTGAGCGTTTGGCGACGAATGTTCGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCCGCGTACCCTCGCCACGTGGGAAAGGAGGCCGCATTTCCCCGCCTTCGGGTGGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGTGGGGACTTTCATTGAGGCCGTGTGCCCAGGATTCGACAAAAAAACCGTACTTAATTTCC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 57918-58240 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831928.1 Rothia sp. HMSC064F07 Scaffold208, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 57918 36 100.0 36 .................................... CGCATCTAGGGCTTTTTCCCTAGCTACACGGCGGGA 57990 36 100.0 34 .................................... AATTCGTTTAGTCAGAATAAGGCCGAAGCTCGGC 58060 36 100.0 36 .................................... GCGACACCAAGCGCGAACGCCGGGAAAATCAGCGGG 58132 36 100.0 37 .................................... CCGGAAGTCCAAGAATTGACGTGCAGTCCTGTGTGTC 58205 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 100.0 36 GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Left flank : GAGTCTTTCAGCACCAGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATAGCAATTCTTAATGCTTTCGCTGCTCACATTGTCAGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATAGGCGGGCGGCACGCTTGTGTGGCGGTGGACGTGGGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATCAGAACGGATAACCCTCATTCTCGACCCCAACCAATGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATTTGCAAAGCTTGAACGTCTTGAGTGCGTGCAGTCTTGGCGCCTCAATGAAAGTCCCCACCCGAAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCCACCCGAAGGCGGGGAAATATTGAGACCATCATATCAGAATGGGCTCACCGGCGG # Right flank : TTTCAAACGCCACAGTGCAAAGTCGGTGCAGTTCACGCCTCAATGAAAGTCCCCACCCGAAGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCCACCCGAAGGCGGGGAAATGAAAATTCCCACGCCAGAGCACAGAAAAGGGGCGGGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATAGCCACCCGAAACTGACCCGCAATTATGCGGCAGAAACGAGTGCTTTGCGAGAACCTCGCGGCAGGCCTACGCAAAAAGTATACCCAAGCAGCCATTCAGGCATTCAAACACTATTGACAAGCCAAAACATCACGCGAGCGACACGCCAGGATTACGTCACGTGCCAGGTTCTCGCGGAGACAGACAAAGCCTCCAAAGGTCATTATCCCCACCTCTACTACCAGTCCGCAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 63375-62987 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831928.1 Rothia sp. HMSC064F07 Scaffold208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 63374 29 100.0 42 ............................. TTCGGGCGTTTCTTGGTTGGTCCGAGCGGGTCGCAATTTCCC 63303 29 100.0 43 ............................. CCGCCGCACATCTGACGCGAACAACTGGCGCCGTGAATTTCCC 63231 29 100.0 42 ............................. CAGGGTTCAGGGCGTTGATGGTCAGTGGTCTTCGAATTTCCC 63160 29 100.0 43 ............................. CTGGCCCGCCCAGGGGTAATCATCCGTGCCGCTGGTATTTCCC 63088 29 100.0 44 ............................. TCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCC 63015 29 82.8 0 ......C.G...A..G............C | ========== ====== ====== ====== ============================= ============================================ ================== 6 29 97.1 43 TTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTTCGGAGGGACTTTCATTGAGGGAACCACAAGCGACAATACGCTAGACCGCGCGGCTAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGTGAGCCTCAGATGCTGCCGCTCCAGCCGGGACACATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGTAGAACGCCATGCATTCAGCCTTATTCACGGTCGCCCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCAGACCCGGCGCATGAGGAAACGGCGCAGCAGGCATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAAGACGCACGAGCCGCGTGCCCTACAGGTGCCGCGGATTTCCCTTCCTTCTGGGAAGGGCTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCAAAACCCCCCACCTTGCGCTACAAAATCCCCCACCTTATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCGGTACTCGCGCTCCTCGGTCTTCAACCTGCGCGCATTTCCCTGCCTTTTCGATGGGGCTTTCATTGAGGACAGTCGACGGCGGCGCGAACATAGGGCTGGTAGCGGATTTCCCTACAATTTTGGAGGAACCTTCATTGAGGCACACCGTCAGATGGTGCATATAAACGCGAACAACGATTTCCCTGCTTTTTCGTAGGGACCTTTCATTGAGGTGTCGATATCAACA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 64288-64616 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831928.1 Rothia sp. HMSC064F07 Scaffold208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 64288 36 100.0 37 .................................... CCAACGCCACCAGCGTGGACCGCAAACCAAGCCTCTG 64361 36 100.0 37 .................................... TGTGGTGTACACGAGGTAGTCGGTCACGCCTCGCCTT 64434 36 100.0 37 .................................... GCTAAACGCCGTGCCCGTGGCTTCGCTTTTGAAGACC 64507 36 100.0 38 .................................... GGCAGGCTCACACCCTGCTAGACACCGTCAGAGGGTGC 64581 36 75.0 0 ...........................NNNNNNNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 95.0 38 CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATGGGTGCAAAAAACCAGTACGCGCGATTATACAGCGCCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCTTTGCCAGAGCATCCTGAACTGGAGTGCCACTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCCAGCCCGATACCTTCTCACGCAGCATGTCAAACCCTCAATGAAAGTCCCTCCGAAAAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGGTTTACTCCATACCTGAAATACGGCGGCATAGTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGATGATTTCTTCTTCCTTGATGTCGCGGTTCCATCGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTATCCAGCACGCCCTTAACGCCCTTGCGACGTGCTCGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGACGCGGGGATACCCGTCATAGCCGAAACTTGCGCGGCCCCTCAATGAAAGTCCCTCCGAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATTAGACGACATGCACGCCTTTATCAGTCAGCTCAGCCC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //