Array 1 480614-481436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026985.1 Pectobacterium parmentieri strain IFB5619 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 480614 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 480675 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 480736 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 480797 29 100.0 32 ............................. TATCTACTGAAACGACAAACCCGATTTCAGTG 480858 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 480919 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 480980 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 481041 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 481102 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 481163 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 481224 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 481285 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 481347 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 481408 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 483213-483912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026985.1 Pectobacterium parmentieri strain IFB5619 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 483213 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 483274 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 483335 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 483396 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 483457 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 483518 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 483579 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 483640 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 483701 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 483762 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 483823 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 483884 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3805894-3806942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026985.1 Pectobacterium parmentieri strain IFB5619 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3805894 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 3805954 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 3806014 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 3806074 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 3806134 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 3806194 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 3806254 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 3806314 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 3806374 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 3806434 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 3806494 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 3806554 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 3806614 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 3806674 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 3806734 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 3806794 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 3806854 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3806914 28 85.7 0 A...........GC..........A... | G [3806939] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3825031-3828479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026985.1 Pectobacterium parmentieri strain IFB5619 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3825031 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 3825091 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 3825151 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 3825211 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 3825271 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 3825331 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 3825391 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 3825451 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 3825512 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 3825572 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 3825632 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 3825692 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 3825752 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 3825812 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 3825872 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 3825932 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 3825992 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 3826052 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 3826112 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 3826172 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 3826232 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 3826292 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 3826352 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 3826412 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 3826472 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 3826532 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 3826592 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 3826652 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 3826712 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 3826772 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 3826832 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 3826892 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 3826952 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 3827012 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 3827072 28 100.0 32 ............................ GCACAGGGCGGCGCGAATGTTTCCCGCGAACT 3827132 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 3827192 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 3827252 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 3827312 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 3827372 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 3827432 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 3827492 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 3827552 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 3827612 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 3827672 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 3827732 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 3827792 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 3827852 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 3827912 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 3827972 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 3828032 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 3828092 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 3828152 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 3828212 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 3828272 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3828332 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 3828392 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3828452 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //