Array 1 1441572-1443754 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134506.1 Porphyromonas cangingivalis strain NCTC12856 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1441572 33 100.0 34 ................................. CTCATCGAAGTCATGCAACTGCACGTACTCGGAG 1441639 33 100.0 34 ................................. TAGTGTTCTTTGTTGTCATAAATATTAGATGGTT 1441706 33 100.0 35 ................................. CAATCGAGCGTTTGTTGACCTAAAGCATATTCGAT 1441774 33 100.0 35 ................................. TCGAATATATCGAACTATTTCAGGGTATTCCAAAA 1441842 33 100.0 35 ................................. ATCGTCGTTAGCCAAGCTCGTGGTCGTAAGCCCGG 1441910 33 100.0 35 ................................. CGTTATTTATGTCCGTTAAACTTCCTTGTTGCTTC 1441978 33 100.0 33 ................................. GGCAATCATGGAGCCACTTAAGTACATGGATAT 1442044 33 100.0 35 ................................. TTCAGCTCTGCGATAGCCGTCTCCGAGAGATCGCT 1442112 33 100.0 33 ................................. ATCTCGCAAGAATATAAGGGTGAGCCGATGGGG 1442178 33 100.0 37 ................................. GACCTCCACATCTCGGATGCAGTACTCACCAAACAGT 1442248 33 100.0 34 ................................. AACGAGGAGGCTCTTGAAGTCTTCGACCTATGCG 1442315 33 100.0 34 ................................. GTTTTTGGCATTTTGCAAGAGATATTAGACAAGA 1442382 33 100.0 34 ................................. AAGGTCAAGAGATGAAATTTTGTCATCGTCATAA 1442449 33 100.0 35 ................................. AATTTGAGCAGTACCTCGAACAAAACGATCATCTT 1442517 33 100.0 34 ................................. TCTTTAAGCTCATCAAATTGCTCATCAAAACTCA 1442584 33 100.0 34 ................................. ATATCGACCTTGATAAGCCCAAGCAGAGTCAGAA 1442651 33 100.0 34 ................................. ACACGAGGTCGAAACAAGGGAGATTTGTCGCTGA 1442718 33 100.0 34 ................................. CTTGTCGCCCTCCATACGGTTCAGGAGAGCATAG 1442785 33 100.0 36 ................................. CTGAAGGTTGGGCGTATCGTGCCATCATCCAAGGGG 1442854 33 100.0 34 ................................. GCGGATCTTGCTCAAGTAGGTGTCAAGGGCATAG 1442921 33 100.0 34 ................................. AAACCGCCCCTTTGCCGGGGCAAAAGTGGTACAA 1442988 33 100.0 35 ................................. GGCGGACAAGGCCATGGGGTATCTTGCGGACTACC 1443056 33 100.0 34 ................................. GCGGATCTTGCTCAAGTAGGTGTCAAGGGCATAG 1443123 33 100.0 34 ................................. AAACCGCCCCTTTGCCGGGGCAAAAGTGGTACAA 1443190 33 100.0 35 ................................. GGCGGACAAGGCCATGGGGTATCTTGCGGACTACC 1443258 33 100.0 33 ................................. GGGTATCCTTTTTCGTTGCTGAGACACTTGATT 1443324 33 100.0 33 ................................. AAGAGCAGGCTTTGACGGAACAGAAACGACGTG 1443390 33 100.0 33 ................................. TTGTCTCGGATGAGGCTACAGAAGTACTCGAAA 1443456 33 97.0 33 ...................A............. ATATTGAGGAAATTTGTCCATAGTCTATAATCA 1443522 33 100.0 34 ................................. TTACAAAAAAAAATAAATATGAAAATAACTATAA 1443589 33 100.0 34 ................................. GATCGAGTCGGAGCGATGGGATGAACTTGAGGAC 1443656 33 100.0 33 ................................. GTAGGATGGGAATATATAAAACTTTTATTCACG 1443722 33 97.0 0 .........................G....... | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 99.8 34 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : CGGTCTTCGAGTGCCTCGTAGATCCGGCTCAGTTTGCTGTTCTCAAACACCAACTCCTCGACACCATCGATGATGAAGAGGACAGTCTCCGCATCTATCAACTTGGAAAGAACTACCGCTCACATATAGAGATCTACGGCCGTGCCACATCCTTCGAGATAGAGGGAGAGCTCATCATATAGCCTCGTACGTCTCCTACGCTCCCCTTAAGATAAACCTCCAACGGTAGTAAATACATAACAACAAGAGGAATCCCTCAGCATACAGACATATCTTCAGTCTCAACAATCAGATCACCCCACACAAACAAACCAACAACAAAAAGTTCTCATCTGCGAACCAATAGTGCACAGCAAAAAGCAGGCAAATTCGCACCCACAGATAATCAGGGTCTTAAATTGCTTGTGCATTGTATTTAATCCACTATCGACTTCAACGAAAAGCCTCTCGCAAATCAAGCCTTCAGAACCGATATAAAATCTATATCTTTGTGGCATACT # Right flank : CAAAGTTTTATCGAAAAGGGATAAGTTGATACTATGTCGCGGTCCGAATGGACTGCGACATAGTATTCTTTTATCTAAAATGCTGAAGCTCGGCGTTGAGAGATCGAACCATAATCTTGTATGACATTCGTCCGAATACAGTAAGATGCCTCGAAGGATATCTTGAAAGAGTCCGCATACACAATGAATGACTTTCAGGGGAGTGCCAAGACTTTTGTCTTCGCACTCCCCTGAAGCTGTTTAGAGAGATGGTTGTCAAGAGAAGAACCGTCAGCTAATTTGCCCCTCCAGCATCTTGAGATAAGTAGGTGATGAAGAGCAGAGCTGATCGTCTGTTCCGACAGCTTCGATGCGGCCGTTATTGAGGAGTATGATCTTGTCCGCACTGCGGATTGTCCTCATACGATGGGCAATGACGATGACGGTCTTGTTGCGGATCAGTTCCGAGAGAGCATCCTGGATGAGGGTTTCGTTCTCCACATCGAGGGATGCCGTAGCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1552815-1551968 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134506.1 Porphyromonas cangingivalis strain NCTC12856 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1552814 37 100.0 35 ..................................... AACTCCTTGCTACCTCTTAGGACGGTGATATGAGT 1552742 37 100.0 39 ..................................... TGCTCTTAGCTTGTAGAAAAGTGCAAAAGATAGGATGCT 1552666 37 100.0 36 ..................................... AGCAGACGTTTCTTTTTCTCCTCAATCGAGGTAGAT 1552593 37 97.3 36 ..........................G.......... GCCGTCGGGCTTATATATCTGCATATTGTCTTATAT 1552520 37 100.0 36 ..................................... CGTATTTCGAGCTTCATTCGATTGGTTTTCGATTAT 1552447 37 100.0 37 ..................................... TTCAGAGCCATCGCTGTTAGTCCGCTCCCCATTTGAG 1552373 37 100.0 38 ..................................... ATTTGAGTATGTAAAGTATCATGGATTTAGTTTTCTTT 1552298 37 100.0 36 ..................................... ATCATTAAAGTGTTTTCTAAACCCATCTTCTTCGGT 1552225 37 100.0 36 ..................................... CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTTCAA 1552152 37 97.3 36 ............G........................ CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTCCAA 1552079 37 94.6 38 ............G.......................T CTCTATCGAGGTGGCTCTGTAATGCTCTCCCTTGTGAT 1552004 37 78.4 0 AC.CT......................AC..C...G. | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 97.3 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : GATTCGTTTTCGACCTTCCTACGACTTTATTTTGCCCCTCTTTACACGTGGCTCAGGGGGCGAATGAAGCTACTCGGATGTGACCCGAAATCCTGAATCTGTTTTCGAAACTTTTTTGATGGTCGCGATTTTCTTTTCCTTTTGAATATCAGATCATTGTGTTTTTTAGATGTGAGGTGAGATTTTCGAAAATACTTGCGGATGCTCTTATCTTCACTCTATTTTCGAAGAAATGCTGTTTTTGTTCATTCTAATCTCCTGATTATCAGTGGTGCTCTGCTGTCAATCTTCGAAAATTGAAAATCGTGAAAATTCCTCTCCGAATTTTCGAAAAATGAAATTCTTTATATATCTTTGTCTCGCAGTGGATTAAATAGAGGTTGTGACCACATGATGTTCACGTAGGAGCATCTCCGAATAGCGATTTTCGAAGAAATAATGACTGCTGATTTTCAGCGTGTTAAGAAAAGGTTTCTATTCAAGTTGCTGATAATCAATCT # Right flank : TTTTGAATTATTTGTCGTATCTTTGCAGTGAAGAGGTGTGAGCCTCTCCGGTGAGATGTCCGTAAGACATCGCGCCCCAGAGGAGATGAGAAGTTGTCTCCTCTTACTTATTTATATCCACTCATTGATCGAGATCATGGGGACACTGCTTATAGCATGGTTATAAGATAGGGCGTTGCCCTTTTTCGAAATATGATCGGAAAGAAGACAAACAAGACCGCCCCCGAAAAGTCGAATGAGACTTTTCGGGGGCGGTCTTGTTTGTCTGGTGTGCCGTATGGCCGTCTTAGGGTGTGGTCACACTTCGGGCTCGATGTTGCCCGAAGCGACATAGGTGCGCCATTTCTCGATCAAGGCTACCATGTCGGAAGGAAGGGGGGCTTCGAAGGTCATTTCTTCCTTCAATATGGGGTGATAGAAGCCGAGGGTCTTGGCGTGGAGGGCTTGTCGGGGGCAGAGGGCGAAGCTGTTTTCGACAAACTTCGTGTACTTGCTGAAGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1888950-1887666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134506.1 Porphyromonas cangingivalis strain NCTC12856 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1888949 37 83.8 37 .C.G..GCCA........................... GGTTCGGGGCTGAGACATTTTGGAGATACCGCTATCG 1888875 37 97.3 35 .C................................... CACAGTTGAGCATCAATATCGTGTCGGGCACTGCG 1888803 37 100.0 36 ..................................... AGAAGAGCTGGGTATGACCTCGACAGCCCTGGCAGG 1888730 37 97.3 35 .............................G....... CAAGAAGTAAAGGAGAACTTCCTATCCTCGGAAGC 1888658 37 97.3 34 .............................G....... CACGATACGACAGGCGACTATGGACTGTGATCAC 1888587 37 100.0 35 ..................................... TTTCCTGAATTGGCTAAATGGTCTACAATCAACAA 1888515 37 97.3 35 ................................T.... GAAGGTCGAAAGGGTGGGTGGTATCTCGTAGCTGA 1888443 36 97.3 36 ................-.................... AACGAGTCGACAAGATCAATAGAGAACTCCTATAAA 1888371 37 97.3 37 .............C....................... AGTTTAAGTCTATTAAACAATTTATGCAACAATATGA 1888297 37 100.0 39 ..................................... GTTCTATGCTGGGATGATGAAAATGGTAAACATAGCGGA 1888221 37 100.0 36 ..................................... AGCAGAAAGCATTATCATAGGGCAAGGAGCATTTCG 1888148 37 97.3 38 ........................C............ CCCATAGTGACCAACTACTCCGCACTAATAATATACGA 1888073 37 100.0 36 ..................................... TCTAGAGTCTCTTGTTTCAAATTCTTTTGGGAAAGA 1888000 37 100.0 38 ..................................... TCATTAGGTTGACCGATTGGGGGATTATTCCGTTACTT 1887925 37 100.0 39 ..................................... GGACTATATTACGATTGCCGTAATTACGTTTAGAGTTTT 1887849 37 100.0 38 ..................................... TGGCCGTTGCCTTACGCATAACAACGGCACAAGCCAAG 1887774 36 97.3 37 ................-.................... CGAAGCAATCTAAAATCCACGCAGGCGGAGGAAGAAG 1887701 36 97.3 0 ................-.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.7 37 GTCTTAATAGTCTTAATGACTGAATATGTATAGATAG # Left flank : GATATAGTCCCATTGAAATGGGAAGATGAAGATATGTCTGCTGTACGGCTTGTTGTTATTCATAAGTATAAATCTGAGAGCGACACCTTCTTCCCCTCCTGCCGAAACCCTTTGGAGTGACATCCTCTTCAAGGAGCCTTTGGCTATAAAACCCGGCGAGGCGAGTTAAACAAAGATAAAAATATTTAATGACATTTCAGAGTCTTTGGAAGAATAAATGCAATAAGACAAAATGACACAATCCGGACTCATCAACCTTTCCCGAAGAGTGCAAATGCACAATCAACGGAGAGCAACAGCAATTCATCGAGAAACACCTGATAGACAGCCATATCGAGACCAGACCCTCTTGACGAGAAAAAGATCATAGGAAGCGACAAAAAAAGTCGTTAGACTTGATAACGAAAGTCGTTAAAGACGATTCATCGCCTTTAACGACTTTTTTAGTGACTCTCCCTATCTATTCAAGTATATATTGATCAATCGAGCTTCATCGCTAT # Right flank : AGATTGATTTTCAGAAACTTACTGAAGACCTCTTTTGTAATTAGTTGATAATCAGCAGTGATTATTTCTTCGAAAATCGCCCTCTTTGAATGTATCTGCATGAACACTTTGAGGCCAAAAGCAGCCCTCAAATTGCTGTACGGCAAAGATATATAAAGATTTTGATTTTTCGAAAAACCAAACAATAAAAATCAATTATTTCGATTTTCGAAAAACGCTCATTATGTACTATTGATTATCAGGCGGTTACAAATCGACAAAGTCGCATTTCTTCGAAAATCGATCCTCTATCAGTTCGACTGCTGCGATTTTCGAAAATAGACACAAAACTATATTTTCGATAACATCCTGATAGACAGCAAAAAGTGAATCTCAACACAGTCATTTTTTTCGAAAATGAAATCCACTCCAAGAGCAAACAAAGGTGATGAATGTCGGGTCGCTTAGTAGGGTACAGACACAAGAGAGGGATACCCTGTGCCTAAGATGGCTTCATCGGC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGTCTTAATGACTGAATATGTATAGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1899984-1900755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134506.1 Porphyromonas cangingivalis strain NCTC12856 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1899984 37 100.0 34 ..................................... ACTGAGCAACAATGCTTGTCTGCAAAGTCGTTGG 1900055 37 100.0 36 ..................................... TCTTTTTCCTCTCCCTTAGGACGAGTGCAAAGCTGA 1900128 37 100.0 33 ..................................... CCTTTCCCTTTCCCTTTTTCTCATGAGGAAGGA 1900198 37 100.0 40 ..................................... GCTATCATCTCTCGACTTTTTTGTAGGCCTTCTACAATTG 1900275 37 100.0 38 ..................................... AAAGTGAACGTTGATTCCCCCTCCTTTAGGGACTTTGT 1900350 37 100.0 34 ..................................... TATCATTGGGACGATCGGCATACCAAGATTCTAT 1900421 37 100.0 39 ..................................... TCCAAGAGTAGTGGAAGAAGGAAGAGGTAATAAGTCCCC 1900497 37 100.0 38 ..................................... TTTTTTCCTTTAAGGAAAGTGCCTTGTTCTAGATTCTT 1900572 37 100.0 37 ..................................... TCAAAAGGAGGAGGAACTTGAGGAGCTTCTCCTAAAA 1900646 37 100.0 35 ..................................... TGATACAGCCACTCGGAAGAGGTAAACAAATTTTT 1900718 37 91.9 0 ........................G........G..T | A [1900749] ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.3 36 GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Left flank : AAAAGGAGAACTAAAATCATATAGAGAGTATAGTATGCTCAAAAAAGCTCCCATTCCGTAAAATCTGACAACCTTACCGAAGAGGTCTCGATAACAAGAACATTTTCGAAAAAAACAACCTTGTCAAAAGTTGCTATACATCTATTGATGAGTTACTTATGGAAATGCTTAAATTTCTCTGTTTTCGAAAATCGCATCAAGCAGACTTCCCCGAACCCGATTTTCGAAAAAATAGACTTTTCTCAAAGTATAACCCGCTGATTATCAACTATCATTTTATCGATTTTTCGAAAATGTCATTTTGATGGATTTTTCCACATAGATTTTCGAAATTTCAACATAATTGTATATCTTTGTCTCTCAAGGAAGTACCCCTTGATCAAGTGAGGATAGTGTACACATAGAAACAGTTTAGAAGGGGGATTTTCGAAAAAACATAAATGATTCACAGAAAAGACTTTATAAAAAGAGTGTTTTCGTAAATCACTGGTAATCAAATT # Right flank : TGCAGGTTGAGCAGAGAGAGAGGGAAATATCTTTTCGAAATCGCTTATATCCATCGTTTTATTATTATTTTGTTTTATATTTGCGGTGTGGAGGAGCGAGACCTCTACGGTGAGATGTCCGCAAGGCATCGCGCCCCCTATCGGAGGAGATGAGTCATCATCTCCTCTTGTCATTTATGCCCACCCTTATTTTGTCGGTATCATACCGGAACAAAGGCTTTTTGTCTCTTATGACTGTTACGACTATCTATCCATATCCATCGTGAAGACAGTCAAGTCCTCGTATGTGCTTTCAGACGGTATCGGGAAGTAGAAAAAAAGTCGTTAAAGACGATCAATCGTCTTTAACGACTTTCGTCATCAAGTCTAACGACTTTTTTTGTCGCGTCCTATGATCTTTTGTATTGGGGGGGGAGGTGGAGGAGATGGGGGCGGAGGCTTGATTTTCGCAAGTCGGGTAGAAGTCGTATTTTTGTACCTATATTTATATTAGGTAATGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //