Array 1 878296-879764 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059956.1 Pectobacterium brasiliense strain IPO:4132 NAK:239 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 878296 28 100.0 32 ............................ GACGTCATCTTCTGCGCCGTCATACTCGGCAT 878356 28 100.0 32 ............................ ACCAATCGCCATTCCAACCACTTCACCAAACA 878416 28 100.0 32 ............................ GCACTGAAGCTGGGAAAGTGTTTGGTGAAGTG 878476 28 100.0 32 ............................ GTGAATCACAGGTTATGCCTGCACAGCCCAAA 878536 28 100.0 33 ............................ CTGCTGCAATAGCGGCTTGTACGTTTCCGGGCA 878597 28 100.0 32 ............................ GCTGTGAAATTGCAGGTGATGGCCGCGTGTTA 878657 28 100.0 32 ............................ CAGCGGATCAACGAGGGCGCGGCAGGTTGCAT 878717 28 100.0 32 ............................ GTTATCTGGCCTACAATTAACTCAGATGGGTC 878777 28 100.0 32 ............................ AAATAATGAGAGCCACGGAAATATTTGGCCCA 878837 28 100.0 32 ............................ GTATAAGCATCTGGATATACTCGTCCATATCG 878897 28 100.0 32 ............................ AGGACTGCAAACCAGCTCCCGCAACAAGCAGG 878957 28 100.0 32 ............................ TATCGCACGCCCGGAAATTCTCGATGCGGTAT 879017 28 100.0 32 ............................ CAATGCTTAAGCTCTTGGTTTTCACGTTTTAA 879077 28 100.0 32 ............................ GCAGCGTGATCGGCTCACTGCCCGCCAACACT 879137 28 100.0 32 ............................ AATCCCTTCGGCAACTTTCAAAATAACTGTCA 879197 28 100.0 32 ............................ CGCGTATCGAACAACGACCACTGACACACGTT 879257 28 100.0 32 ............................ GATGCCCGCCGCTACCAGAGCGAATTAACGCG 879317 28 100.0 32 ............................ CAGGCGAATAACAGGACGCTCGCTCGGCATAG 879377 28 100.0 32 ............................ TCACTGAATCCCAGCAGCGGCCTTGCCTCGTA 879437 28 100.0 32 ............................ GGAACAGCAGCAATCCGTCGTCCACCGCCGCT 879497 28 96.4 32 ...........T................ TGTTCGGAGATCGAGAAATAATTCCGCGAGAT 879557 28 96.4 32 ...........T................ AACGTCGCCAACATAATGCAGTATTGGGAGTT 879617 28 100.0 32 ............................ TATGACGCTGCTGGACTCAATGCCGCCAAAAT 879677 28 96.4 32 ...........T................ ATGATGAATGCAGCAAATTTGCCATCAGCCGG 879737 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGTGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCATTAGAGTGATCGGGCTACA # Right flank : ACGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTTTGGGGAATGGAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTGAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 886340-885894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059956.1 Pectobacterium brasiliense strain IPO:4132 NAK:239 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================== ================== 886339 28 100.0 32 ............................ CAGCTCTGCGTCAATATCTGTCAGCACGTGGT 886279 28 100.0 32 ............................ GCACTTCCTGCGCGAAATCTGCCTGAATCGTT 886219 28 100.0 32 ............................ ACACCTGAGCGATCGTTAAATCTTTTATTCTT 886159 28 82.1 70 ...........AGC......T.A..... TAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTG 886060 26 64.3 114 .CCG......TG...--.T.T....G.. ACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGT 885920 27 50.0 0 ....C.-....CCGCAT.GCGC.G...C | ========== ====== ====== ====== ============================ ================================================================================================================== ================== 6 28 82.7 56 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTTTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTAAATAAATACAGAAATTCAGCCAGCGGCTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGTCGCGCACCTGAAAACCTCAGTGGTATTAAATCGCCTCAAAGAGAACGGTTTGATGATGCCGGAACTGCCTGCGTTGCCCTAAGTTGGGGCAATCGCCTCTATTTGGTGCAAAAAAGGAATGATTCGCGCAACAAAAACCGAATAAACGCACAAAATAGACAAATAAATAATAAAAAACGCATGAATCACGCATTATTTTCATTCATATAATTCAATATGTTGCCCTTATCGCAGGCGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.14, 5:0, 6:0.25, 7:-2.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //