Array 1 26412-27842 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZZ01000018.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2765 NODE_18_length_48955_cov_3.86087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26412 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 26473 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 26534 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 26595 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 26656 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 26717 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 26778 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 26839 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 26900 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 26961 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 27022 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 27083 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 27144 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 27205 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 27266 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 27327 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 27388 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 27449 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 27510 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 27571 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 27632 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 27693 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 27754 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 27815 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44454-46374 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZZ01000018.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2765 NODE_18_length_48955_cov_3.86087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44454 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 44515 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 44576 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 44637 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 44698 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 44759 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 44820 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 44881 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 44942 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 45003 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 45064 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 45125 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 45186 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 45247 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 45308 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 45369 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 45430 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 45491 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 45552 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 45613 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 45674 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 45735 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 45796 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 45857 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 45918 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 45979 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 46040 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 46101 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 46162 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 46223 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 46284 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 46345 29 93.1 0 A...........T................ | A [46371] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //