Array 1 80426-79994 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLV01000001.1 Porphyromonas gingivalis strain WW2866 NODE_1_length_142966_cov_26.0035_ID_29090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 80425 36 100.0 30 .................................... AGACTACGTAAACAGCTTGATGTAGGATGG 80359 36 100.0 30 .................................... AACGTCTCCACTTCTTGAGGGGTGTCCCCT 80293 36 100.0 30 .................................... ACCACCTGCATTCCAAATATAAGGGGGTAC 80227 36 100.0 30 .................................... TACTTTGACCCTACTAATAACTACGATGAA 80161 36 100.0 30 .................................... GAGGCGGGCGGCCGCCCGAACAAGGTGTAC 80095 36 100.0 30 .................................... TGATGAGCGATTCAAGCTTCGCTGAAGCTA 80029 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : AGCTTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATTTTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 36245-35895 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLV01000021.1 Porphyromonas gingivalis strain WW2866 NODE_21_length_39644_cov_15.4808_ID_29130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 36244 46 100.0 30 .............................................. AAAGCTCTCCCTATTGAAGAGCAGCTATGA 36168 46 100.0 30 .............................................. AGCGAACGGGACGGCATTTTCGCAGGCAGC 36092 46 100.0 30 .............................................. GTTGGTTAGTAGCACAGTTTCTGTGCTACT 36016 46 100.0 30 .............................................. GGTGATGTTATTGAATTAGATGGAATAAAA 35940 46 91.3 0 .................C.T...............T......A... | ========== ====== ====== ====== ============================================== ============================== ================== 5 46 98.3 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : TTTAGTGTTGAGTTGTTTATATTGGTCAAAAGCCATTTGCATGGCATCGTAAGCAATTGGATAATCGGTTGAAACTGCATTGCTAATTGATCCACTTGCCAAAATGTGAGCAATTCTTTTTCATCTACGTGTAAAAAACAAGCAAGTTGTAAAACTTGTTCTTTCTTCGCTCGGCGTTCTCCTCGTTCAATTTTACTATACAAACCTGAATCAATTTCAAGAACAGCAGACATTTGCCGTTGTCGTAAATCGTTCTTTACTCGTAGTTGTTTAAGTCTATTCGCGAATAACATCATAACATTTTATGTCTTGACAAATAATGTACAAAATTACAACTTTTTCTTAAGATAACGAAATAATTTGGCATGTTTTTCACTAAAAAAATGCACAAATAAGAGCAAAAAAGAGAAAGATAATGTTTTTGCTAAAATATTATTTTGTTGATATTCAGTTGATTATTTGTTTTTGATTTCTTTTGTTTTCGGTGTTTATTTGGTTGT # Right flank : AGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAACTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGTGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAACCATTTTCAATTTGTATACAAATCGTTTTCAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //