Array 1 79626-79192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWH01000021.1 Thalassospira profundimaris strain S25-3-2 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79625 36 100.0 30 .................................... TGCAGGACCGGCCAGTATTGCGACGCCTCG 79559 36 100.0 30 .................................... GCGTTATACATGCTCATTTGATCGGCGATC 79493 36 100.0 30 .................................... TATCGGGTCGGTGTACGGTCACAGAAGTGT 79427 36 100.0 30 .................................... CCACCTGATTGCGATGTTTGCCCGCACCGA 79361 36 100.0 30 .................................... GCCAAGACAGTGTTTTGGTTGGAGCAAGAG 79295 36 100.0 31 .................................... TATCTTCGGCATCTTCAAACATCTTTTATTC 79228 36 80.6 0 ..........................G..GG.TTTA | C [79194] ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.2 30 ATTGTAGCAGGTTCGATTTTAGAGGGTAGCTACAAC # Left flank : AGGTTCGATTTTAGAGGGTAGCTACAACTGCAGGACCGGCCAGTATTGCGACGCCTC # Right flank : CTGGCTGCACCATAAAATCCGGGCGATCCAGTCGAGGTCTTTGGCTTCGATATAGCGGTCTTCGTAGTCCGGGTTGAGGGATTTAAGCTCGATCCCCATTGCGCCGCGCCGGACCAGTTCCTTGGCCATCACTTCGCCTTCGCGGGTTTTGACCACGACGCGGTCGCGCGGGCGGATGTTTGATGCCGGGGAAACGATGATGAGATCGCCATCGCGAAAAACCGGGGTCATCGAGTCGCCTGAAATGCGCAGGCCATAGGCGGTGGGGTCGTGCAGGGCGGGGAAGGTAATGTCCTCCCACGCGCCGCCAACGGGATAGCCCGCATCATCAAAAAAGCCGCGATTGCCCGCCTGGGCAAAGCCGATGACCGGTACGCGCCCGGCGGCATTGCCATCCATCAATTCGGAAAATTCCCGGAACGTCACATTCGCCGCCGAGAGCACCTTGGCGATGCTTTCGGTTGAGGGCCAGCGCGGTTTGCCCGCCGCCGTATTGCGTT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAGGTTCGATTTTAGAGGGTAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 560545-561835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWH01000001.1 Thalassospira profundimaris strain S25-3-2 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 560545 36 100.0 30 .................................... GTCACACACACTATCAAACCAGGATCTCTG 560611 36 100.0 30 .................................... CTTCGCCCCCTTACCCTGTAATGATGCAGG 560677 36 100.0 30 .................................... CTTCGCCCCCTTACCCTGTAATGATGCAGG 560743 36 100.0 30 .................................... AGCCCGTGACGGTGGAAAGTGGGACGAAGC 560809 36 100.0 30 .................................... ACACAAACGAGAGTTGGTTCCCCTTGTTGT 560875 36 100.0 30 .................................... ACACAAACGAGAGTTGGTTCCCCTTGTTGT 560941 36 100.0 30 .................................... GATTTCCGGCATTACAACACGTGGGAACCA 561007 36 100.0 30 .................................... GATTTCCGGCATTACAACACGTGGGAACCA 561073 36 100.0 30 .................................... GATTTCCGGCATTACAACACGTGGGAACCA 561139 36 100.0 30 .................................... GACGGTGTAGCGCGGGTTACGTTACCCTGG 561205 36 100.0 30 .................................... CAAGTTGCGCATCCAGTGCAGCGAGTTTTT 561271 36 100.0 30 .................................... CAAGTTGCGCATCCAGTGCAGCGAGTTTTT 561337 36 100.0 30 .................................... CAAGTTGCGCATCCAGTGCAGCGAGTTTTT 561403 36 100.0 30 .................................... GTCGCCTGCTGAGTGGGACGAGGACGCGAT 561469 36 100.0 30 .................................... CGAACGTGTGGCCGGGGCTATTAAAATGAA 561535 36 100.0 30 .................................... AGACAGAATGCCATCAAGAAAGACTTCGGC 561601 36 100.0 30 .................................... AGACAGAATGCCATCAAGAAAGACTTCGGC 561667 36 100.0 30 .................................... GCGCCCAGGGCGATTGAGTAGAACAGGTTT 561733 36 100.0 30 .................................... CTGCTTTGTCATGGTAAAATTCCGATCCAA 561799 36 83.3 0 ...........................G.TG.AG.G | A [561815] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.2 30 GTCGACGTTCATCCCCAAATTGAGGGGAACTACACC # Left flank : CGCCCATGACCGGAAACTGAAAAACGCCGTGGCAAAATCGGTGATCGAAATGCTGGCCCGCGAGGGGTTTGACCTCGATTGGACCATTGAACCCGATAGTGGCAAGCATATTTTAAGACACGGTAAAATCCGCACGCGCCAGGCGCAGCATTTTCAAAAATCCCGTATTCGTATCGAAAAGAAATCGGCCAAGCCGGATAAAAATGATACAGTCAAAATTCGCGAAAACCTGCATGGTGATGCGATGGTCGAACGGGTTGCGCGGCTGTTTGCGGCCCGGGCGCAAAAGTATCGCGATATTACGACGGAAAAACGGCTGGATCATCTGTTCCTGAAACCAAAGGGCTAGAATCAGAAAAAATGGAAGGCACACGCATAACGGGTGGTCAAAAACAGAGAAAAAACGACGCCCGACTCACCCAAACAGGAAGAAAAATCATGAAAAATGACTCGAAATTTTCCGATAAAACTTTGAGATATATATAGAATCCGGGGTTCCT # Right flank : GGGTGTTTGCGGCTTGAATTGGGTGGCGTTGGAAGTGCGTTATGGTTTTGCCGGGGGGCGTGTTATAGTGGTGGCCGCAATCGGGGGCGGATGACCGTTTTACCGTGGGGGATTTGGCTGTTACGTGACCCGTCTGGCACGCGGGTATTGAAGGAGCGGGGGATCAGCATGGTCTCTGGCGTTTATGATGCAGGCTCTGTTCGATATGGATTGGCCCGGATCGCCGGGGCCGTGTCGCGATTTTTTTTGCTGTTGCTATTGGCGTCGGTCGGGCTGGTGTTTGTGCCATTACGGGCCAGTGCGGATGACTGCAGCACGCTTTTAGTCTCGGGAAACCCGGATTACCCACCTTATTTATGGCCTGATCCGGCCAATCCGGCGGAATTGATTGGCGCGAATGCCGAATTTATCAAAATGGTCGGCCGGGAAATTGGCGTGGAGATGCAGGTGCGCCATGCCGGGCCGTGGGGCCGGGTGCAGGAAGAGCTGCGCCGGGGCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACGTTCATCCCCAAATTGAGGGGAACTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 661715-663664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWH01000001.1 Thalassospira profundimaris strain S25-3-2 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 661715 36 100.0 31 .................................... TCACAAGACCCAAAACTTGACAAAACAGCAC 661782 36 100.0 30 .................................... GCATCCGATGTTCTTAGGTCAGTGTCGTAA 661848 36 100.0 30 .................................... ACGTTCTCGGTCGAAAGGCCGAAAGCGTTC 661914 36 100.0 30 .................................... ACGTTCTCGGTCGAAAGGCCGAAAGCGTTC 661980 36 100.0 30 .................................... GGAGTTCCCTCCCTGCGTCACCCGGTCTTT 662046 36 100.0 30 .................................... GGAGTTCCCTCCCTGCGTCACCCGGTCTTT 662112 36 100.0 30 .................................... GTGAGGGTTGGTCGACCCCCGACAGCACCT 662178 36 100.0 29 .................................... GGGCGGGGTTAATTTCCTGTCCGATGCCC 662243 36 100.0 30 .................................... GCCCAAGGGGCGCAATGCTACGCCTTGAAG 662309 36 100.0 30 .................................... GCCCAAGGGGCGCAATGCTACGCCTTGAAG 662375 36 100.0 30 .................................... GCAGGATCGATCCAAACACAAACTGCGCTG 662441 36 100.0 29 .................................... GTTAATGAAGGGCTTTCTCCCCTCGCCCA 662506 36 100.0 29 .................................... GTTAATGAAGGGCTTTCTCCCCTCGCCCA 662571 36 100.0 30 .................................... CAAGGTGGTGAAGTCGAAGAATGGGACCCG 662637 36 100.0 30 .................................... GGATTGAGCCAAACGAGGGAAGAACCGATG 662703 36 100.0 30 .................................... ATGATGCATTTCGCCAACCTATCATTTCCG 662769 36 100.0 30 .................................... ATGATGCATTTCGCCAACCTATCATTTCCG 662835 36 100.0 30 .................................... ATGATGCATTTCGCCAACCTATCATTTCCG 662901 36 100.0 30 .................................... TCAAAGCCTTACCGGAATGACTGGAGGTGT 662967 36 100.0 31 .................................... TGTGAGGCTGCAATGGAGGATCGTGCCGGTG 663034 36 100.0 30 .................................... ACCACGCATGAAAGGCATCAACCGACATCA 663100 36 100.0 30 .................................... ACCACGCATGAAAGGCATCAACCGACATCA 663166 36 100.0 30 .................................... AGTTTTCACCAGAGATTGCGCGTGTTTTCG 663232 36 100.0 30 .................................... AGTTTTCACCAGAGATTGCGCGTGTTTTCG 663298 36 100.0 30 .................................... TGCTAAACGCGGTGCTGCAAAGTTCGCGAT 663364 36 100.0 30 .................................... ATCATGCGCCCGACAGGTTGATTGACACCG 663430 36 100.0 30 .................................... GGTCAAAGCAGAGGGGGGCGCAGTGCGGAA 663496 36 100.0 30 .................................... ATCATGCGCCCGACAGGTTGATTGACACCG 663562 36 100.0 30 .................................... GAAAAACGCCCGCTTTTATACCTTATGGAA 663628 36 72.2 0 ..C.................G...CA..TA..TCGT | C [663648] ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.1 30 ATTGTAGCAGGTTCGATTTTAGAGGGTAGCTACAAC # Left flank : GGGCAGCGCAAGCAGCTTGAAATTCCCGCGCGCATCAGAATTGAAAAACAGATGGAGATGGAGGGGCTGTAACCCGGTCAGGCCGGGTGCCACGGGCCATGTCATTATCGGGGTATCGGATCATGTGGGCGTTTGTGATGTTTGACCTGCCGGTTGTCACCAAGGCGGAAAAGCGCCGGGCGCGCAAATTTCATGACTACCTGCTTGATGAAGGGTTCGAGATGAAACAGTTTTCCGTCTATTACCGTTTTTATGAAAGCCGGGCCAAGGCCGATGCCGCAAGCAAACGGATTGCCGCGAAAATTCCCGAACGCGGCATGGTCTCGATCCTGTCCGTCACCGACAAACAGTTCGGCCAGATGGTCAATTTCATGGGAAAAGTGCCCTCAAAAAATGACCAAAAACCGGACCAACTGGCGCTTTTTTAGGTGGAAAATGACGGTTTCTGACTCAAAAAAATCCCGCAACATATTGAATATGCTGCGGGATTCTGGGTTCCT # Right flank : TGGAAATCTATGATACGATCGTGCCGTGAGTGTCAGATTACCTTGCGCGTGTATGTAAGGCACGCAGGAGAATGTGCTATGGCAGTTATGAGTGTTTCTTTGTCGGATTCTTTGAAAGAATGGGTGGAGGAGCAAACGGTAGAAGGTGACTATATGGACTCGAGCGATTATGTCTGTGACCTGATCAGAAAGGATAAGGCGCGACAAAAAGCAGAGAGGCTTCTGCAGGCTGCTATCACCGAAGGCGTTGAAAGTGGTGAGCCACAAGAATTTGATGTGACTGCTTTCAAGTTGAAAATGCGCGAGCGGTATGCCGGAAATTAGGGCTGTTTCCTGCCATTTGACGCCAAAGGCCCTGGCAGATATGACGGAAATCTGGAGCTATGGTGCTATAAACTGGTCAATTGAACAGGCGGATCGATATATTGACGGCTTGAATCGCGTTTTTCAGTTGATTGCCGTTTTTCCGGATATGGGGCGGGAACATTGCGTGTTCAGTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAGGTTCGATTTTAGAGGGTAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //