Array 1 149257-149464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTJ010000002.1 Pectobacterium quasiaquaticum strain A477-S1-J17 P._quasiaquaticum_A477-S1-J17_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 149257 28 100.0 32 ............................ CACGGTTTAGCGCTAGCAGTTGGGTCTTCAAC 149317 28 100.0 32 ............................ TGCTGGTACGTGATAGAGCCTTCGTCATAAAT 149377 28 100.0 32 ............................ CTCCATCGAACGGCGAGAATAAATTAATCTCA 149437 28 96.4 0 ......................A..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACATAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAAC # Right flank : AATTAAACGCGCCGAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTAATTGAGGTGCGACTCATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCCGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 153528-152779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTJ010000002.1 Pectobacterium quasiaquaticum strain A477-S1-J17 P._quasiaquaticum_A477-S1-J17_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153527 28 100.0 33 ............................ CTGACGGCTGCAAACATTGCACGCAGCAGTTGC 153466 28 100.0 32 ............................ TGATTGAGTTACGGTTAGCATTCGCTCTGAAT 153406 28 100.0 32 ............................ AAACACAAACAGCGGAGCAACACAAAATGACT 153346 28 100.0 32 ............................ GTTCATTGAATTGTACATTCTGTTAACATTTT 153286 28 92.9 32 ...........G.T.............. TTAAGGTGGCCTTGTTAATGGATTGTTAATCA 153226 28 92.9 32 ...........G.T.............. TATTCGTCGTGGGTACTTCCGACCTTACGGCA 153166 28 92.9 32 ...........G.T.............. ATTCTGCAAACGGCCCTTGTTATCTTTGCCAT 153106 28 92.9 32 ...........T.T.............. ACTTGCTGGATGAGCTGTCGATCCAGGCGTTA 153046 28 92.9 32 ...........T.T.............. TCTCCCTGTGTACCCGATGATGCGCTGATTGA 152986 28 92.9 32 ...........T.T.............. ACGGCACAGTTACTGACTGGCTCTACAGTGAC 152926 28 100.0 32 ............................ AGCATTGGTTGAATCTGCTGACCTACGGCTGA 152866 28 100.0 32 ............................ TGAACCAGTTAGAGCAGGAGAACGGCCCGCTA 152806 28 92.9 0 ...........T.T.............. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGCCCACCGTTAACGAGAATGCGACAATGCTGGAGATAATAAACATTGGCACGTTTAGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGGAATGAATCGCAGGCTAACTATTTGATAAAGAAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : AGCGTGAATCATTACCGCGTCAATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGATCCATATGGCAGCAGAGTTGGTAGAAGGCCTTGTTGTGATCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGGAACAGCATCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCGCCCTGCACACGCGCCACAAACGTATTGGTTCCTAGTGTCCCTTTTATCGGGTTTTGTTTATTGTCGTAAAGCACCTTTGATATCGCCGGGGCGTTTTTCAAATAGCGCTGTTTCAGCTCGGCGACAAACTGATAGAGCGACTTATCACTCTGGATCGGATGACGGTCAGGGTATTTTTTTTCCAGCCAGAGGCCGAGTTTGCCTTGATCGAGGAGCGTTTGTACTTGGGCAACAATCGCTGGGGGATA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 162481-163408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTJ010000002.1 Pectobacterium quasiaquaticum strain A477-S1-J17 P._quasiaquaticum_A477-S1-J17_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162481 28 100.0 32 ............................ GCGACCGCTGTCGCTGGGCTGACGTATTCGTA 162541 28 100.0 32 ............................ TTGCTTGACAGGGCAGAGGCGTCGACCAAAAA 162601 28 100.0 32 ............................ CCGAAGCCGTAGTTTTTGTCCATCCACTTCTC 162661 28 100.0 32 ............................ TCGTTCCAGACCACCAAAGACGGCACTATAGA 162721 28 100.0 32 ............................ AAGGCCCAGCTCGCAGTTATGCGCCAGTAAAT 162781 28 100.0 32 ............................ TCCGCGGCGCGCGACACAGCCGAACTGCCAGC 162841 28 100.0 32 ............................ AAGAGTCATATAAGCCAGCACATCATGCATCG 162901 28 100.0 32 ............................ GTCTCGCGAATGATTATGCGCAACTGTTCTTC 162961 28 100.0 32 ............................ ATGATAATGTCTGCCTCGAACATGCTGACCTC 163021 28 100.0 32 ............................ GTCCATTGCAACAGCCGACGACAAGCGTCCGG 163081 28 100.0 32 ............................ ATCACGTCGGCCATCTTGAACAGCAGGTCCAC 163141 28 100.0 32 ............................ TGATTGCCTAAGCTTTGTAGCGCGCGGTCGGC 163201 28 100.0 32 ............................ TTGACTAAAGTTTAACCGGGGCCACAATGGAC 163261 28 100.0 32 ............................ GAGAACCTGAGCGTCGGCGGTTACCTCGACCT 163321 28 100.0 32 ............................ TCAACCTGAATGTTGGGTATCGCAGTAATAGA 163381 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGTTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAAGACGCCCCTGTCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTCTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTAGTTAGCATAAAAACTTAAC # Right flank : ACGCCCGTACTCAATAATTTTGTGACTAGAGCCGTTCACTGCCGCATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCATAGGCAGCTTAGAAAGTGACCAAGCTGGCCGACGAAGACGTCGAAGCGTTCACTGCCGCATAGGCAGCTTAGAAAAAGACAGGGCCGCGACACATATTTCGAGCCTGGTTCACTGCCGCATAGGCAGCTTAGAAACACCCGCCATGTGCGCAAAGTCACCCGCACGCGTTCACTGCCGCATAGGCAGCTTAGAAAGAAAGACGAGCCGAAAGGCCCGGACGTAGCGAGTTCACTGCCGCATAGGCAGCTTAGAAAAGCCAGGGTTTTAATCATGGGTGACTTATATTGTTCACTGCCGCATAGGCAGCTTAGAAAGGTAGAACTCCTGTCAAAGGCGCGACCCGCTGGTTCACTGCCGCATAGGCAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 163586-164033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTJ010000002.1 Pectobacterium quasiaquaticum strain A477-S1-J17 P._quasiaquaticum_A477-S1-J17_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 163586 28 100.0 32 ............................ AAGACAGGGCCGCGACACATATTTCGAGCCTG 163646 28 100.0 32 ............................ CACCCGCCATGTGCGCAAAGTCACCCGCACGC 163706 28 100.0 32 ............................ GAAAGACGAGCCGAAAGGCCCGGACGTAGCGA 163766 28 100.0 32 ............................ AGCCAGGGTTTTAATCATGGGTGACTTATATT 163826 28 100.0 32 ............................ GGTAGAACTCCTGTCAAAGGCGCGACCCGCTG 163886 28 100.0 32 ............................ GATGTTATATGCCAGACTTACCATCGCGTCGA 163946 28 100.0 32 ............................ CACAGAATTACGGGGGTTAACCGTGGGTAAAA 164006 28 85.7 0 ....................T.C..C.C | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCCGCATAGGCAGCTTAGAAAATCACGTCGGCCATCTTGAACAGCAGGTCCACGTTCACTGCCGCATAGGCAGCTTAGAAATGATTGCCTAAGCTTTGTAGCGCGCGGTCGGCGTTCACTGCCGCATAGGCAGCTTAGAAATTGACTAAAGTTTAACCGGGGCCACAATGGACGTTCACTGCCGCATAGGCAGCTTAGAAAGAGAACCTGAGCGTCGGCGGTTACCTCGACCTGTTCACTGCCGCATAGGCAGCTTAGAAATCAACCTGAATGTTGGGTATCGCAGTAATAGAGTTCACTGCCGCATAGGCAGCTTAGAAACGCCCGTACTCAATAATTTTGTGACTAGAGCCGTTCACTGCCGCATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCATAGGCAGCTTAGAAAGTGACCAAGCTGGCCGACGAAGACGTCGAAGC # Right flank : CTTATCGAGATGCGTCGCTGGCGCGACGCATTTTAGAGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCCGCCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGTTGCCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACTGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCACCGTACTCCCACTATCAGGCTTCGCGCGCCAGAATCGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //