Array 1 31550-29018 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMOO01000020.1 Salmonella enterica subsp. enterica serovar Weslaco strain VA-WGS-00333 NODE_20_length_45360_cov_37.0586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31549 29 100.0 32 ............................. GCTCTTGTCATGGCAGATGGCGTAGAAGAAGT 31488 29 100.0 32 ............................. GAATGTTTTTAAGTGATGGCATTAAAATTTTT 31427 29 100.0 32 ............................. TCAGTGAGTTTGTCGCAAATAACCCCAATCTG 31366 29 100.0 32 ............................. CTTGATTAACGAACTTTAACGAACTTCACAGA 31305 29 100.0 32 ............................. CATCCGGATCTCCTTTCTGCGCCAGCAGATAG 31244 29 100.0 32 ............................. CCAGCGGCGGCGGTGGCGATGAGCTGCTGACC 31183 29 100.0 32 ............................. CGGGCAGGCGTGGCGGGGAAAGCATTGCGCGC 31122 29 100.0 32 ............................. CTATGGTGCATAGCCGCATTGGACGCGTTGTC 31061 29 100.0 32 ............................. CGGCAATCAGTGAACTGGTGCTGCGTGCCGGC 31000 29 100.0 32 ............................. CTGCCCCATGAGCATCATTTGCTGCTCCGATA 30939 29 100.0 32 ............................. CTGTTAATATTCCCCACGCCCTCAGCGCCGAA 30878 29 100.0 32 ............................. CTTGATTGGCGCGCTAGGGTAATCCAGTGGAG 30817 29 100.0 32 ............................. GGGATTATCGAGCACGCGATATTCATGGACAC 30756 29 96.6 32 ............................A GCCACGCAGCCGAAATACGAGTGGCAGATTGA 30695 29 100.0 32 ............................. AGGTAATCCTTGAGGTTAACACCATTACCGAC 30634 29 100.0 32 ............................. AACTGGCTACCAACCTGAAAAAGGACGTAATC 30573 29 100.0 32 ............................. CTGCCACACTACCGACGCTCGTCAAGGTCAGG 30512 29 100.0 32 ............................. TTAATCAGCGCTTCGTTGGTGTCACACAACAC 30451 29 100.0 32 ............................. CAGCCAGCGATCCAGAACCAGAACCCCTTTAA 30390 29 100.0 32 ............................. CTCGCCACCAATTGCCAGCAGCAGCACCTGCT 30329 29 100.0 32 ............................. GCTGCTTTCGACACGGGAAATCGGTGCGATGC 30268 29 100.0 32 ............................. ACGATTTTGAGTGTTCGTCAGATTTTTGTGGT 30207 29 100.0 32 ............................. GACGGTTTCCGTTTCTGGGGTAACCGCACCTG 30146 29 100.0 32 ............................. ATGCAGACAATACGCCTGGCCTGCACGTCTAT 30085 29 100.0 32 ............................. CAGTCATCTGGAATTCTGATCCCCGCAACGCC 30024 29 100.0 32 ............................. TCCCGTCAGGCAGGGATTTCAGTGGGGGCATG 29963 29 100.0 32 ............................. CAACTGGTGAAACAGACTAACGGACACATTGA 29902 29 100.0 32 ............................. AGTCCCATCATCGTTATAATTAGATAAAGAAA 29841 29 100.0 32 ............................. CGCGTGACCGGGGCGTTGCGTCGCTGGGTTGA 29780 29 100.0 32 ............................. ACATCAGCGCAGAAAGTGGCGGCGATTACTGG 29719 29 100.0 32 ............................. CAAATAATTATATTTACCAGAACTACACCCCT 29658 29 100.0 33 ............................. GCGAGGCTTTCGGGGCGGAAATTGGCGCTGCGC 29596 29 100.0 32 ............................. GGTTAAATGACATTAACAAAGCGCTTCGTAAA 29535 29 100.0 32 ............................. GAGATTGCAATGAGTGTAGTGGAGGGCGTCCG 29474 29 100.0 32 ............................. CGCACCGCATGACGAGCCCAAAAATACAGCAA 29413 29 100.0 32 ............................. CCACATCCGGTGCGCCCGGTTGTTGATTTCAA 29352 29 100.0 32 ............................. CTGATGAAAGACGGGTACTCATTCCCTGCAAT 29291 29 100.0 32 ............................. TCGCATCCGTAGATAAAAATGAACCACCAAAT 29230 29 100.0 32 ............................. TCTGCACTACGCGCCCGGATGGTCAGGGTATC 29169 29 100.0 32 ............................. AGCATGGCCTGAGCCAAGAAACTGCTGCCCGG 29108 29 100.0 32 ............................. GGAGAGCGGCAAGAACAGGAAAGGTAAGTTCA 29047 29 93.1 0 ...........AT................ | A [29020] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGATTTCCGTTCTGACAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTTTACCTGTTTAAAATCAATAAGTTAGAGGTCTTTAAAAATTAGGAAAAGTTGGTAGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGATAGATTTAGA # Right flank : TTTCACCAGCATATCAGTACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACAGAAAGTACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7892-6644 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMOO01000018.1 Salmonella enterica subsp. enterica serovar Weslaco strain VA-WGS-00333 NODE_18_length_53482_cov_38.7013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7891 29 100.0 32 ............................. GATGCGATCAGTATGCGGCCGGATTCGGCTGC 7830 29 100.0 32 ............................. GAAATTACTGTGCTGGAGCTTACCGAAAGATG 7769 29 100.0 32 ............................. CGTACAGGAAATCACCAGCGAGGTTAGCACCA 7708 29 100.0 32 ............................. GTACTGATTCAGGAAGGCCGCAGGGTTGGTAT 7647 29 100.0 32 ............................. CCCCCACCATTGCGCCCTGAGAGACTTTCTGT 7586 29 100.0 32 ............................. CGCGGAGAGTCGGAAAAGACAAAGGCGGCACG 7525 29 100.0 32 ............................. TTTCCGCAATAGTTTTTGCTATCTGATTTTCG 7464 29 100.0 32 ............................. CGCCAGAGCCAATCGCGCCGGATGGTAACAAG 7403 29 100.0 32 ............................. CGACACAGCAAAGGTAGAGAAAGCTGTTAAAT 7342 29 100.0 32 ............................. GACATTCTCAGGCACGGCACTCCGCAGCAAAA 7281 29 100.0 32 ............................. GCGATCAAAGCAGTCATGAGCGAGACGCAAAC 7220 29 100.0 32 ............................. GTATTTTCAGCCAGCGGCTTTTTGCGCCCGAA 7159 29 100.0 32 ............................. TCATTATGCCAGCCTCACTATGTAGTTAAATG 7098 29 96.6 32 ............................A GCCCGTCAGCGTGCGGCGAAAACGCTGGAAAC 7037 29 100.0 32 ............................. CAACTGCTCGCTATCTTTTGTTGAAATGGATC 6976 29 100.0 32 ............................. GCGCACCCGGTATTTTACGCGTTAGCATTTAT 6915 29 100.0 32 ............................. GGGTAGCCAAGCACCTGGAGGCCGAGAGGGAG 6854 29 100.0 32 ............................. CGTGATTACCCGGCGACGGTATTCAATACCAG 6793 29 100.0 32 ............................. GTATGGGTTGTAATCTCTGGGGTTCCATATGA 6732 29 100.0 32 ............................. CCAAAAAATCGGGGTTACTGTAATGGGGATTT 6671 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGACTCATCCATTACCTCCCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTATATAAAAGCGCTGATAAATTTTTCCATAGTGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATTAACTTTTTTTCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTTATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTGGTTTATAAACAAAGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGTTGCAACAAACCTGTAAAGTAAAAAGACCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTCGGTCGAGGGTGACTCTACGTCGATCTTGTTCGATACCGGCTCTGATGGCAGTTTTATGCAAAACACGTCGGCGAGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCTGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGAACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTACCTACCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //