Array 1 17831-16948 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIP01000014.1 Escherichia coli strain EC_44 NODE_14_length_111146_cov_12.198939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17830 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 17769 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 17708 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 17647 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 17586 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 17525 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17464 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 17403 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 17342 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17281 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17220 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17159 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17098 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17037 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16976 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8916-9981 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIP01000017.1 Escherichia coli strain EC_44 NODE_17_length_103092_cov_10.290414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8916 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 8977 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 9038 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 9099 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 9160 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9221 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 9282 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 9343 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 9404 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 9465 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 9526 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9587 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 9648 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 9709 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 9770 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 9831 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 9892 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 9953 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //