Array 1 1085804-1086345 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1085804 30 100.0 36 .............................. TAATATCTTATGGCCATAGAGGGTTTAGCTTCAATA 1085870 30 100.0 34 .............................. AGTATTTTTTCTTTTGAAATATACTCTTTTATAC 1085934 30 100.0 36 .............................. TGATAGCACTTATGACTATTGCAATTATAAATGGAC 1086000 30 100.0 36 .............................. TCTGCTTTAAAGTTCCCTTTTCTAATAGCCAACCTA 1086066 30 100.0 34 .............................. AACCTTGAAGATATAAAACCAAGTAAAGATTCAA 1086130 30 100.0 36 .............................. TTATAAATATGGATTCGATATTAAGGTTCGTGTTAG 1086196 30 96.7 37 ...........................G.. TTAATTATTGGATATACTAAAAATAGTAGGAGATATC 1086263 29 80.0 22 A.....T.T.......T.-..........A ATAGTCTAAATTGTAATAGTAT T [1086276] Deletion [1086315] 1086315 30 73.3 0 .C.T...C.......GA.....T.A....A | A [1086339] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 94.4 34 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : TTTTTAGGATTTACTAAAGCAGCCCATGCATTACTACCATTACCAATAATGGAGTTTTTCCTATAAAGTATATGCCTTGCAGAGATTTATATAATGGATTTGGAATACTAACTACTTGTTGTAATGGTCTTACCAATGATTCATGTTGGCATAAATCATTTTTATCTAACATAGTAACACATCCTTTTAAATATAAACTATTTAAATTATTTAATAGATAAAAATTAAAATTTTATCTATTAGTATATTGTATTGATATAACTCAAAAAAGTTGTAATATTTTAACGAATATTAGTGAAGGATACAATATTATAGATAAAAGCTTTACCAGATGATTTAAAATAAAAGTATATTGTAGAACATTGATTTAAAAGGATTTGATTAGCTTTTTTAAAATATTTTTGCAAAAAATTAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTGGATTTTACAGTG # Right flank : ATAATATTATGCAAAAGAAATTTACATTTTAAATCTAGTTATTAAATTCAATAGTATAAATAGTAATAGTTTTGGTAATGATATATATCACAATAATAAATATAAAAATAATTTAAGTATATTATGATGGAAGTTAAAGGAGAGAGAAATGAAGAAAAAATTAAAATTGTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGGAAGGAGAGGAATTGATGGTATCATTTATATAATTGAATTAACTCTAGTTATTACATTAATTTTAAAAATCTTTCAATTTATAAATTGAAAAATCTACTTTCTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAAGATAAAGCATTATGGTAAAATTTATATTATAATGAAAATATAAGGAGGTGAAAAAGTGAAGGTATATGAGTTGACACTAAAAGTATTTTTACTAAAAGATATTAAAAGTGATGAAAGTTTAGAGAAAATAGCAAATATAAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1095582-1098080 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1095582 30 100.0 36 .............................. TCTTTCTTTATTTCATAACTTATTCCATCTAAAACT 1095648 30 100.0 35 .............................. TCCATTCCTTTAAATAGAAACTGTGAACCATTTGG 1095713 30 100.0 35 .............................. TTTTTAATTAAAAATTCTGCAAATCCCACAGGTAA 1095778 30 100.0 36 .............................. GCTGCTATCTCATTATTTAATAATCCTTTTTTATAA 1095844 30 100.0 36 .............................. GTAAGCATTAAAATTAACAATACAACTGAAATAATA 1095910 30 100.0 34 .............................. GTTAAATATGTATTTAATAGAGTTGTGATTACAG 1095974 30 100.0 36 .............................. ATTTCCTTCTGGTGTTCCTGGGTCGAGAATAATTGA 1096040 30 100.0 34 .............................. GCTTACGTCAGAAGTACAAAAAATGAGAGAATCT 1096104 30 100.0 35 .............................. AGTTTTTAAAAGTAACTTGTAACTAACTACAGTTT 1096169 30 100.0 34 .............................. TTAAATTCAACTCCGCCGCTAATATCTTTATTTT 1096233 30 100.0 35 .............................. TTTTACTAATATTTTTTAACACAAACTTATCTTCT 1096298 30 100.0 35 .............................. GATATGAAATATATTTGAAGAAGGTTAGAAAGTGT 1096363 30 100.0 35 .............................. AAAGAAAATGCTAAATGTGCAGGTTTTACTTCTTC 1096428 30 100.0 35 .............................. TTAAATGCTTTTGATGATTTTAAATCTGATAATTT 1096493 30 100.0 35 .............................. TAAAGGACAATATCTGTTTTAGAATCATCTACTAT 1096558 30 100.0 34 .............................. ACAATATAAGTATCTAACTTACTTGAACCACTTT 1096622 30 100.0 34 .............................. TTTTGATTTATAATATCATATGCAAAATTCTTAA 1096686 30 100.0 34 .............................. AAAACATTTTATAACAGTATTAAAAGTGCATATA 1096750 30 100.0 34 .............................. CGTTGTCCTGCTAGTTCAATACCCCTGTCTACAT 1096814 30 100.0 37 .............................. TATAGTTTGCTGTAGCTTCTGCTATTTTCCCAAATAC 1096881 30 100.0 35 .............................. CCAGTAACCTTAACAGCCCTATATAATGACATATT 1096946 30 100.0 34 .............................. AAGCTAAGTAGATTTCCATCACCAGTATATATAT 1097010 30 100.0 35 .............................. TTTCTATTGTATCATTATTTTCTTTTTCTTGCTTA 1097075 30 100.0 34 .............................. ATGGTAAGATAACATCTTTTTCACTTTGGAAAAA 1097139 30 100.0 36 .............................. ACAAGACAAGGACAACCCAGTCCTAGAGTACCCGTA 1097205 30 100.0 35 .............................. CTTAAGTACCCAACGGCTAATTTTGATTTCTTTGA 1097270 30 100.0 34 .............................. TAAAATACCTCCTATTCTCCTATAGCTACCCATT 1097334 30 100.0 34 .............................. AATTCGAAAAAAAACTAATAAAGGAAAACAGCAA 1097398 30 100.0 37 .............................. GATTTTCTAAATCTTTTATATGGAACACCTAACATTA 1097465 30 100.0 35 .............................. TATATCCACCAAACGCCTTCCCCTTCTCCTTTTTC 1097530 30 100.0 34 .............................. TTATTTACTTTATTGCTTTTTATTTCTTCATTCT 1097594 30 100.0 37 .............................. AGAGTAAATTTGATTAAATAATAAGATTAAAGTTAGT 1097661 30 100.0 35 .............................. GGCGATGAAGAATCTTTTAAACTGATGCAGAATGA 1097726 30 100.0 35 .............................. GGCGATGAAGAATCTTTTAAACTGATGCAGAATGA 1097791 30 100.0 36 .............................. TTATTTACTTTATTGCTTTTTATTTCTTCATTCTTT 1097857 30 100.0 35 .............................. TTTGGTAATACTGGTGAATTATTAATACTATTAGT 1097922 30 93.3 34 .......AA..................... TTAGGGAAACACCCTAAAGTAAGTGTTCGTTCTG 1097986 30 93.3 35 .......AA..................... CTCTGTAATGTATGTCATAATGTTTTGCATCCAGA 1098051 30 90.0 0 .......A....................TG | ========== ====== ====== ====== ============================== ===================================== ================== 39 30 99.4 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAAATGGGTAAAAATTTTAATTATAATTATGCATTTCTTTTTTATGATGTCAATGAAAAAAGAGTAAATAGAGTGTTTAAAACCTGTAAAAAGTATTTGTCACATTTTCAGAAGTCTGTATTTAGGGGAGAGCTTACACCAGCAAATTTTATATTATTAAAAAAGGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTGGGAAATCCACATGGTTTAACAGGAGAAGACTTAATATTATAGATAAAAGTTTTACCAGGTGATTTAACATAGGAATGTACTCTAAAGTATTGAGTTATAAGGGTTTATGTCCTGTTCTTAAATATAGTTTTCCAAAAGATAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTTGATTTTACAGTG # Right flank : GAGAACTTAAAGTTCAGTTTAAAAAGGTGGATAAAAAAAGCAATATATTAAACATCAATAATATAAATTATGTTGTTAATAAATAAATTATATTAAAATTTTATATAAATATATGGTATAGACTGTTGATAATGTGTTTATCAACAGTCTTTTTGTATTACAACTAAAATATTATGGTAACTTTTTTACTTACACCTTTAAACATAGCATCTATCTCCCCTTATGTATATTATCATAAAATATTGACAGGGATTCATTAAAATAATATAATTATACTAAACATATAGGAATACTATGAAATGTACAAAATAAATATTTTTATTATTAAAGGTAAACCTATATAAAGATATAAAAATAAGAAAATCGTGGTGATTATATGAAAAAGAATATATACATGGATTATGCAGCAACTACCTATATAAAAAAAGAAGTAATAGAGGCTATGATGCCTTATTTAACTGAATACTATGCTAACCCATCTTCTGTATACAATATAAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1100866-1102269 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1100866 30 100.0 34 .............................. TTTCTTCGTCTACATCTTCAATTCCAACATATCC 1100930 30 100.0 34 .............................. TTTTCACACCTTGTTTAGAAATAACATTTAAACT 1100994 30 100.0 36 .............................. TACACAACCTAAAATTTCCCAATTTACCATCTATAC 1101060 30 100.0 35 .............................. GTGAGTTAGATACGGATTTTGCTTTTTTGATATAT 1101125 30 100.0 36 .............................. AATGCTAAAACACGAGGCCTACCATAGTTGGACCAT 1101191 30 100.0 37 .............................. TAATCTTCTGTTACGTTTTTACTTGTTAAAAGTTTTA 1101258 30 100.0 46 .............................. TCTTTTTTTTCTCTTGATCTAATCTTGATCTAAACCCAATATATTT 1101334 30 100.0 34 .............................. GGGAATGTTGATCCAGATGCACTAAAAAGAATGA 1101398 30 100.0 34 .............................. TTATCTTTATCTAAGTTATTAAAATAACTATTTA 1101462 30 100.0 34 .............................. ACTAACTAGCATAATTCAACTACACACTACGCAC 1101526 30 100.0 35 .............................. ATATAGAGTTTATGTATATCTTATTATTGTAAAAG 1101591 30 100.0 36 .............................. CACCTAACAAGCATGGCAAAAGCAAGATTAAGGCTA 1101657 30 100.0 35 .............................. AGGTATAGTTGACAGAGTAACGGGCCCAGGATTAA 1101722 30 100.0 35 .............................. ACCACTGGTTTTTCTTGTTCTACAGGTTCTTCCTC 1101787 30 100.0 34 .............................. AAATTTATAACCCTTTTCCCATCACTCCATTTAT 1101851 30 100.0 35 .............................. TTTTTATACACTCCTTTATTTTTTTATTTGATTGT 1101916 30 100.0 35 .............................. TATATTAAATACAATACAAGCAATGCAAAGACTAA 1101981 30 100.0 36 .............................. AAAATACACCTTACACTATATAAATATTTTTTTTTA 1102047 30 100.0 34 .............................. TTCATTTCATCTTATTTCCTCCCTTGTTTTATTC 1102111 30 100.0 35 .............................. CACAGAAAATCTGTCACAAAATGTACTTAAAGCAT 1102176 30 100.0 34 .............................. GTTGTTGCAAAAAATGCAACAACTGAAGAAAGAG 1102240 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 22 30 100.0 36 GTTGAACAATAACATAGGATGTATTTAAAC # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCCTTTGATAATTTAAAAGAGCCAATGGAAGTAGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACTCCTCTGGAAAATGATAAAGTAAAGGTGAATTTTAATGAAAAGCAAAGAGCTATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGATGATTTATTAATAGGCGGAGGAATAATTGAATAGAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAAATGGTAATATATCCTAAAGTATTGATTTAAAAGGGTTTATACCATGTTTTCCAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAGTTTTCAATGAAACCTTGAAATATCAATAAGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : CAGCATAATATCTTTGAATTGTAAAGTAAAAAAATACCGTATATTCTATTTGGAATAATACGGTATTTTAATACTATTTTTAAATTGATTTTTCTTATGTTTTAAAGGAGCTAACCAACAAACTGATAATTATCACAGAGTTTTACTTTGCTTCATCAATCTTTTGGATGGTATCTTCACGAATAGCTTGTCTTAAAGATTTTAAATAATCGGAGAACGCAACCTTATCATCTGCGTAGGTTAGATTGAGTTCAAATTCTTTGGGAATCCAAGTAGACAAGTCTGACATATTGTGCTGAATCAATGCTTCAAGGCCATCAATGGCTTTATAAATTTGAGATTCAACTGTTTTGCGTTCTGCCATTTCTTCATAAAGTTCTCGCATTTCTACTGCATATTCCTCTGGCAAGGAATCAACCCAGTTATAAAGCAGATTTTCTTCCATCAGCTCGTGGTCTAGGTTCTTTTCAAAAGTAGGAATATCTCCAGTAAAACATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 1160321-1160616 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1160321 29 93.1 38 ........G.......A............ CCAGTTATAAATACACTGGTACCTACTTCTTTCCTAAG 1160388 29 96.6 37 ........G.................... GTAACTAATAGGAATGGGTTAGACATAGCAACTAAAA 1160454 29 100.0 37 ............................. AAATATCCTCTATGTCTTTTTCAACTTCTATATATAG 1160520 29 100.0 39 ............................. GAAGCTACAGAATAAGCCAAGATACAAAAGATAAAACAG 1160588 29 89.7 0 ...................A....C...T | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 95.9 38 TTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : AACCTTTTCACTTAAATATTTAGCAGCATTTATTGAACTTAAATTTAATGATAAATTTAGTATTTCATTTTCTAATCTTTTTGTTTTTTTAGCTTTAGGCATTAAAAAATCAAAGTTTTCTGCAAAGGTTTTATGACTACAAGCATCATTTACACAAAACATTTTTCTGTTAGTTAATTTTAGTATTACCTTATTGCCTTGAATAGGTAAATCTTGAAATTGTTTAACATATCTTGAATGAACCTTAGTTGAAGGTGTTCCACAAAATGGACAAATAACTTGCTTTCTATTAGAAATAACATTTGTATAAAAAGTATTATCTATGATTTGATGATTAACATATTCAAGATTTTTATCTAATAATTTTATAAATTCATCCATAAAAAACTCCTTAATATTATTAAATTATTTCAAATTTTATCATAAATTTAACCTTGGTTCAACAGACATTGGAAAGAACCATTTTAATCTTGACATTTATGGCATTTTCTGTATCTCCG # Right flank : TTAATAGCGGTTTAACGACCGCTTTATTTTTATGCTTGGTTTTTAGAGTAATATAAATAGACTTTATGTTTAAAATTTTAATAGAAAGTTCTATTTTAATAAGTAAAAAATCACTATTATTAGAAGGATTTACAAAAATAGTGTGGAAATATAAATATGGTAGTATATGTTATACTCATATACAAATTATGACATAAGCGAGGAGATTTCATGAGAGCAAATTTAGAAATAAGTTTTTCAGATAAATTGGAAGTACCAATACAATATAATTATTTAGTTCAGGCTATGATTTTAAATTGGCTTGGAGACGAAAAATACCAAAAATTTATCCATGATAAAGGTTATGAATACAATAATAGATCCTATAAAATGTACACATTCTCAAAATTATATGGGAAATTTTCTGTAAATTCAAAAAATGGAATCATAACATTTTTTGATAAGGTAAATCTTATAGTATCATCTCTAGATACAAGATTTATACAATATTTAGCTTCTAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 1169768-1171794 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1169768 29 100.0 39 ............................. GGAACTATTCTAAATGGCGTTGTAACAGACGTTGTAACG 1169836 29 100.0 39 ............................. ATACTTGGAACATGATTAGTAATAAAACATGGGGAGAAG 1169904 29 100.0 37 ............................. TAGGATACATTGTTGAAAAGTATAAATACACTACAGG 1169970 29 100.0 36 ............................. GTGAATGATGACACTATATTGGTTGATAAATACATG 1170035 29 100.0 38 ............................. TTGGCAGAGATATAATGGCAAAGGATTATATAGAAAAG 1170102 29 100.0 40 ............................. GGTGTCGGTTGTTGCACCGAACACATCTATAGTATTATAG 1170171 29 100.0 36 ............................. ATGAGTTTGGTTGTCAGATTAAAGTAACGGATAAAG 1170236 29 100.0 39 ............................. ACGGTACAGAAACAACTATAACTAAAGATGATAGTGGTG 1170304 29 100.0 37 ............................. TTTTTAAAGGTGCTATACTACCGCTAAGCGAGAAGGG 1170370 29 100.0 39 ............................. TTGACTTGCAAATGTATTTATTATTTTATACATTTCAGG 1170438 29 100.0 37 ............................. TTCATTCTTTGCTTACTATCCCTACGAATTTTTCTAG 1170504 29 100.0 40 ............................. TAACATAGAAATTGGGTTAGATAGAAAGGAAATATTAGAG 1170573 29 100.0 38 ............................. AAATTATCTTTTAAAAAATAATTTAGTTCATCTTTATG 1170640 29 100.0 36 ............................. ATTCTTCCGCAGTATCTCCTTCTAGCAAGGTAGCAG 1170705 29 100.0 36 ............................. ACGCCATGTACTCTGTTAAGCACCTTCTCCCACGTG 1170770 29 100.0 36 ............................. TTTAGTTAAGAAAGTTTCACCTTACAGTTACCAAGG 1170835 29 100.0 36 ............................. TTTATCAATGTAGCAACCCTAAGACTAAAAATTACG 1170900 29 100.0 37 ............................. TAAAATTTGTAACTATAGATTTTATAGCACTATCTTG 1170966 29 100.0 38 ............................. TAATGCCAAATACCTGGTCATAATCATCACTGTAAAAG 1171033 29 100.0 38 ............................. TTGTTCCACTTGAAGATAAATTTAAAACTGTTGAAGAG 1171100 29 96.6 37 ................A............ AAAGACGTAATATCTGCCAAATGCGACGCTGTTTCCT 1171166 29 96.6 38 ................A............ GCAAAAGATACTCTTTTCGGGAATTTCATTATTCTATT 1171233 29 96.6 38 ................A............ GACGATGACTTAAGCTTCTTATTGCCTACAAATTGCAT 1171300 29 96.6 36 ................A............ TGTATGAAGTATAGAAAATTGTAAACTTGTAAAAAT 1171365 29 96.6 38 ................A............ TAAGCTATTTTACTTAGTATAGAACAGCCTACCCCATT 1171432 29 96.6 39 ................A............ ATAAAAATAGTGGATTAGTTAGAAGTGTATGGGTTCCTT 1171500 29 96.6 37 ................A............ ACAGTTTTCGTATCAAACCTAATTCATAAAAATTAGT 1171566 29 96.6 36 ................A............ TGCTATCGCAAATAAAATACGTTGTTCTGTAGGTGA 1171631 29 96.6 40 ................A............ TAACAAAACTCCCAGTTCTGCCGAACACTCTGTCATTCCG 1171700 29 100.0 37 ............................. TAGTTAGTTTCTACTTCTTGGAGCGTAGCGGTCGCCG 1171766 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 31 29 99.0 38 TTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : ACGCATATGTTTGCTATATTAGTTTACGATTTTGGTGAAAAAAGAGTGGGCAGAGCTTTAAAAACTTGTAGAAAATATTTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATAAGTGATGCTAATTTAAAAAAGTTAGAAATGGAATTAGATAGAATTATGCATAGTGATGAGGATTCGGTAATTATATATAAGTTTAGAAGTACTAGATATACTACAAGAGAGGTTATAGGTCTTTCAAAAAATGAGCAAGATATATTTTTATAGAAAATTTTAGAAACCATCGTTACTTGCCTTAATAATGATTATTGGATAAGAATTATTTACAAAGTCGTCGACCCCCAATCCTGTAAAAAACCCGGGAGGCCGACGACAATTTTTAATTGCTTCATAAGTATTGATGTTATTGATGTAAAGCAATATTTGTATATTTTTGTTTACACTTTGTTAATAATGGATAGTTTTAACAAAGTGTGTTATAATGCAGATGTAATTGG # Right flank : CCATAATAAAAAAACACCTTACTCCATACTATAGATTAAAAAATTACATATGGAGTAAGGTGTTTTTAATAGATAAATAAATGAACCGTCCCCTAAAAATTTACCCCCCAGGTACTCAAGTTATTACTATTTCCTATCCAAATAGGACAGTTCATGGGAATGAAATCAAATAATTCCTCAACATTATTATTAAACATACGTATACAACCTAGGGATGAATCGGTTCCAATGGACCAAGGACTATTATTTCCATGAATTCCATACATAGAACCACCATCTATTGACAGTCCAAGCCATCTTTTCCCTAGAGGATTTTCAGGCGTTCCACCAGGTACAACTTGTCCTGTTCTTGGGCTAATCCAAGTAGGATTTATAAGTTTAGATACAATTGTAAATTTACCTTCAGGAGTATAAGAAGGTGAAGCACCTGCAGCTATGGGATATTTCTTGTGTACTTTACCATATAAATATACTGTTAAAATTCTAGTATCTTTATTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : TTTTTAGAATAACTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 6 1206165-1206453 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAOH01000001.1 Clostridium cochlearium isolate src3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1206165 30 100.0 34 .............................. AGCCTTTTTACAACTTTTTTAATTATTTCATGTT 1206229 30 100.0 35 .............................. AAGTATGTATCTGGCAATGGTTTTTTAAACTCCCT 1206294 30 100.0 34 .............................. CCAGTTGCCCAAACAGTACCGTCATTTTTTACAA 1206358 30 100.0 35 .............................. GCTAGTTCGTTTTGTTTATTAACTTTAGCATTAGG 1206423 30 96.7 0 .............................A | G [1206447] ========== ====== ====== ====== ============================== =================================== ================== 5 30 99.3 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : ATCCTAATTTAATATCATTTTATTCTATGAAAGATACTAAGTTTAAATTTATATTTGCTATAAAGAAAAATTCATTTAAAATTAAATCTGGAGATGAGAATACAAAAATAGAAATAGAACAAAAGTACTTAATTAAATTTATAGATGATTTAATAAAAGGTATGGTTGTAAATCATGGTATAGGAGCAAAAACATCTGTTGGTTATGGTTATTTTGAAATAGACGAAAATTTACAAGAAAATAACAAAAAAAAATTTAAACCAGAAAAAAGATAAAAAATTTAAAGAAATTAAAAAACTATAATCATATGTTTTTATATTTTAAAATCCCAACCATTTTTAACGTTCAATATGCCTTAAAACAAGTAAAATCAATACATGAATCATGTTTGCAGCATAAAATATTAATTTGTACTCATCGGTTGGGATAAATTTTAGAAAGGCCTTTAAATTCAATAATTTAGTACTATAATGGAAATAAGGAATGTTGATTTTACAATG # Right flank : ATTTATATTTGTTATTATAAAACTACTTTATAATGTATATTTTATGATATAATATATTTAATAAACGGCAGAAAAGTAAAGATTTTTACACTAAAAAGGAGACATTTATGGATTTTAACAAAATAGAAGACTCTATAATGAAAAATGCTATGGATATATTTAAGCAAAGTGCTGTAGATTTCTTTAAATTAGATACTAAAATTATAGCACCTGCAAATACAGAACTTAAAACCATAGATATAAAAAACAAATTTTACAGATTACACTTTTTACACAGAGGATGGTAATTATCTTCATTTTGAATTCCAAACTACCAATAAGGAAGAAGATATAAATAGATTTCTATTTTATGATGCATCTCTTTTTTATAAGTATGGTAAGAAAGTTAATACTATAGTTGTTTACTCGTCTGATATAAAGAAAAGCAAAACAAAGGTAAATGCGGGATCTTTAAAATATGAGATAAAGGCTTTTTATATGAGTAGTTTAGATGGAGATGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //