Array 1 1825410-1823171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028301.1 Acidovorax avenae subsp. avenae strain Sa2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1825409 32 100.0 38 ................................ CGTTCTACCCTTCGCCGGCTCCACGGCACCTTCCGGAT 1825339 32 100.0 35 ................................ CCTGCCAGCCCTTGCCCATCAGATCGCCGACCTTG 1825272 32 100.0 34 ................................ ATCGTGGTGGGTGGCGAACTGCGCAATATTGACC 1825206 32 100.0 34 ................................ ATCCACAATTTCACACTCGTGAGCTTCCACGGGT 1825140 32 100.0 36 ................................ ATCCCGGCCGGAGACATCCCAAGCAGGCGAGTCAGG 1825072 32 100.0 34 ................................ TCGATCCCGAAGCTAACGACTGGCAAACTACCCT 1825006 32 100.0 36 ................................ GATCTCTTTTTGCAATGCGCATGTGGCAGCAAGCAG 1824938 32 100.0 35 ................................ GTCTATAAGCGCAGCTACTACGATCCTCGCGCGCC 1824871 32 100.0 36 ................................ CTCACGCTGGACATGGCCTGCGAGCCGCCGGCCGAC 1824803 32 100.0 35 ................................ GCCTTGTCCAGCGCGCCGGCCAGGGCCTTGCCTGC 1824736 32 100.0 35 ................................ ATGATCGTGGGCGCGCCCATGTGGGCCGTTGTCGC 1824669 32 100.0 34 ................................ TTACAGCCTTCCAAGTCCCATTCGCGCTCGTCGT 1824603 32 100.0 34 ................................ CTGTCGAAGTTCGCCACGGGGGAGAAGACCGACG 1824537 32 100.0 34 ................................ TCGGCCTTCGCTTGCTTGCGGTGCGCCGCGGCCG 1824471 32 100.0 34 ................................ ACGCCTACCGGCCCCACACAGCTCCCATGGTGGA 1824405 32 100.0 34 ................................ ACGGTCTCTGGTGGCTACAACCCCGGCCAGATTG 1824339 32 100.0 34 ................................ GGGTCGGAAATCCTGGACCACACCCCTGGTGCGG 1824273 32 100.0 35 ................................ TGGAAGTGCTGGAGCGCGCCAGCGAGGCCGTGACC 1824206 32 100.0 36 ................................ AACGGGTCCACAACCGAAGGCGGGCGCGATGCGTTG 1824138 32 100.0 34 ................................ TTGCCGGTCATTGCGTAATCAGTCATACGCCAAC 1824072 32 100.0 35 ................................ ATGCGCAAGCTGTTCAGGGAGTACGTGGAGCGGAC 1824005 32 100.0 35 ................................ ACTGCGGCCGAACTTGCTCCGGCGCACCTCGTCAT 1823938 32 100.0 35 ................................ TCGCGATACGTGCACGTGAGCAACGAGGCCACGCC 1823871 32 100.0 35 ................................ GCTCTGTACCGTCGCGCTAATGACTCGTGTAACAA 1823804 32 100.0 34 ................................ ATTTTCACCACGCGCAACGGCGGCACGACCTGGC 1823738 32 100.0 35 ................................ ACGCCGCTGAAAAACACGTCGCCGGTATGGCCCAT 1823671 32 100.0 35 ................................ TGCCGTCGCAATCACATCGGGAGGCTGGACTCGAC 1823604 32 100.0 35 ................................ TCCTCCTCCCTCTCTCTCTTCCCCCGGCACGCCCG 1823537 32 100.0 36 ................................ GCTACTCTGGTCGCCAACATTGGCGCCGCGCTGGCG 1823469 32 100.0 35 ................................ ATGGCCGTGGAGTACATCGGCCGCCGTGTGCCGCA 1823402 32 100.0 35 ................................ TCGTTCGACCAATTGCGGCGAGCCAGATCGACCAC 1823335 32 100.0 34 ................................ GACAAGTACAAGCACCTGCCGTTCCCTTTTGCCG 1823269 32 100.0 35 ................................ AGCATCTCCTGCACGGAGTGGCGGTAGCCGGTCAC 1823202 32 90.6 0 ...........C........AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 34 32 99.7 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : GACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGAGTGAGCAACCGCACCGGCCTGGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTGAAGCGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAACCGAAGACGGCGGCGCCCTGAGGGGGCCCTGCTTCCGCTCTTTCCTTCCTTATTTTTGCCGGGCGTTGCGAACCGCCAGTGACCGGGCTGCGCGCCTGGGGTTCGCGCGGGTGCAAGTGGTTGAGGGGAAAGGGAGTTTTTCCTGGGTGGCGGACGGGCGCGCATGCTGCGGGTCGATGGGGAGCAGGTTCGCGGATGTGCAGGGTAAATGGCTGGGGTGGCGCGGGTTTATAAAGATGCC # Right flank : ACGCGCTCACCAACATCGGGCTGATTCCATGCCCTCGGATGGTTCCCAAATGAAGAACGTCAAGTTTCTATTTACTTTCCACAAAATGGAATAGAAATACCATTCCGGCCGAGGCAAACTAGATACAAAGATTACATAAATATCGATAGCTTTTTTCTTCTGGGAATCCTCATGCCAAGCAGTCTCACACTTCCCTCGCGCAATACCAGCCTCCAGGGACCCTGCGCACTGGCGACCGTCTTCGCGTTGTCGATGGGAATGCAGGTGAGCGCGTACGCCGGTGGTATGGCGAATCTTCCAGACAACGCGGCAGGGCCGGTGGCAAGGGTGCAAGGCGTCCATCTGCCACAGGAGCAACCGGCCGGCGCGCATGAAAAGGCCAGCCGGCTGGTTTTCATCGATGGCGGTTTGCCGGATTTCCAGCAGATTGCCGATGCCGCTGCCGACGACGCCATCGTGGTCACGCTCAGGCCCGGGGAGGATGCCGTCGCACAGATGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4484729-4485096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028301.1 Acidovorax avenae subsp. avenae strain Sa2 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4484729 32 100.0 35 ................................ GCCGGGAAGGGGACATGGCTCTACGCGGTCCCGCG 4484796 32 100.0 35 ................................ ACCGCGCCGCCGATCAATCCACCGACGAGCGCGCC 4484863 32 100.0 37 ................................ GTGTCGGCGCTCATGGATGCCGTGGTCACCACTGTGC 4484932 32 100.0 35 ................................ AGGACGACAAGTCCCGCGTGCTCAAGGCCCGCATC 4484999 32 100.0 34 ................................ CTCACGTCGGCCGCCCGGCTTCGTTTCACCGTGT 4485065 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 100.0 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT # Right flank : CATGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //