Array 1 110454-111941 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRV01000035.1 Streptococcus iniae strain QMA0142 NODE_1_length_170545_cov_108.758_ID_3921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110454 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 110520 36 100.0 30 .................................... TCGATTGGAACAGGTTTGACATTATAAACT 110586 36 100.0 30 .................................... TGCTTGGTATGCAAATGCATTAAACGGTCC 110652 36 100.0 30 .................................... ATGAAAAAATTACCGAACTGCCGGGAAAGC 110718 36 100.0 30 .................................... CGAAAGGTACTATAACCGATGAAGATATTA 110784 36 100.0 30 .................................... GGTCAGATACGCTCAAGGTCAAACAATTGT 110850 36 100.0 30 .................................... GCACTAGCAACAGACCAAGACTCGCACGGA 110916 36 100.0 30 .................................... TTTAGAGAGATAGCTTTGTTTTGTATCTTC 110982 36 100.0 30 .................................... TATGGAAAATGTTGACTTCCACGGTAAATC 111048 36 100.0 30 .................................... TTTGATACGATCTATGTCAGCGAGCATTTG 111114 36 100.0 30 .................................... GTTTTAGCTTTTTTAAATTCTTCTTGCTTC 111180 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 111246 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 111312 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 111378 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 111444 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 111510 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 111576 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 111642 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 111708 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 111774 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 111840 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 111906 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.8 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATTCGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAATCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //