Array 1 235671-237391 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 235671 29 100.0 36 ............................. GAACAGTTAACTGGGTGGCTTCTAGAAAGACTGGAC 235736 29 100.0 36 ............................. GTTCTTGTCTCTTTCTGCATACTGATATTTAGCTAG 235801 29 100.0 36 ............................. AAAATCAAATTTAAGTAGTGTTTTCAAACGTTTCAC 235866 29 100.0 36 ............................. TCACTATTTTCTGGAATAAGTACATTCCATGATGCC 235931 29 100.0 36 ............................. TTTAAAAAAGCTGTGGGGTATTAAATATGAAAGATG 235996 29 100.0 37 ............................. GTGAATTTTTATTTTTGTAGATGAAGTTTCAATGAAT 236062 29 100.0 36 ............................. ATGCAAGTACTCTGTGAGACAGGTTTAGTAACATCT 236127 29 100.0 36 ............................. GGAAAACAAACAGACGAATTTGGAGGATACCAACCA 236192 29 100.0 37 ............................. ATAGTTCATAAAATTCATCATTTCTTATTGTATAATA 236258 29 100.0 36 ............................. TTCTGAATCACAGTAATCAATGTAGTGAGTTGTTAA 236323 29 100.0 37 ............................. CTTTAACCATGATACATCCTCCTTTTAAAATTTTTTG 236389 29 100.0 36 ............................. TTTACTGTTATCATGTTACACCTCCAAAAAATTTTT 236454 29 100.0 36 ............................. AACATTATTCATAAAACATTCAAAGGTTGGCACGCG 236519 29 100.0 37 ............................. CTGTATATCTGATGATAGGTTATCGAACTCATTATTC 236585 29 100.0 36 ............................. CTTCTATTTCTCTTAAACTTAACCAGATCGGATCTT 236650 29 100.0 37 ............................. AGTGTAGACTTTGATACAAAAATAGACACTCCAAAAA 236716 29 100.0 74 ............................. ATCCGAGTCAAATTTTACGAGACTTGGTGATATATATATCACCAAGTCACCAAGGTTACTGAAGTAATAGACCT 236819 29 100.0 38 ............................. GTATAAATCGAATCGTACGAACTATCGTAAAAATTGAA 236886 29 100.0 37 ............................. ATTTCTAACTCTACATAGTGAACATCAAGAAATTTAA 236952 29 100.0 53 ............................. TCGCTTTTTGACATTTTTTAATTCTCGGTACCAGCGTACTTTTATTTTCTCTG 237034 29 100.0 38 ............................. ATATCAAGATGTTATCAATCGGATAGGTCAAATAGGTT 237101 29 100.0 36 ............................. CTCTAATTGTCACTTGAGAATAGCATGTGAGCAAAT 237166 29 100.0 37 ............................. TGCCATCAATATTAAGAATTTCTGTCCATCTTTTTTC 237232 29 100.0 37 ............................. CTCGTCAAATTCCTGGTTTATTATTCTATGATTTTTG 237298 29 100.0 36 ............................. TCTACCACTCTTTTTTGTAACAATAGCTTTGTCATA 237363 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 100.0 39 GTTTTCTCCCGACTATGAGGGAATTGAAG # Left flank : ACAGTTAGAGAACTGATAGAAAAGGGTATGACAGAAACAGAAGCTATAAGAGAACTTGCAAGAAGGATAAGAGAAATCCAGTCAGTTAAGTAAGCAATAGAGTTGTTGTCCTATCAAAATTTTAGCTTCATATGTTGACAATACATTATAGTTGCATTTTTTTGGAAAGTATAGTATACTATTTGATAGTTGATAATTACTAAGTTAGACCTTGACAACTGAATAGGTGAAACTAACTTAAATTTTTGAAAAATAGGAGAATTTTGCTACTTGATATTAAGTATCATTTAGCTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAATAGTGATGCGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGCTACGATGCAATTAACCTCAATTTGCAAGCGGTTAACGAAAATAAAAATTGCCTACAAAGTAGCGTCATTACTTGATTATTTAATTTTTTTTATTTTTAAAAATTAACGG # Right flank : GTTTCTCAACTTTTTCTTAACTTCTAACATCTATCTTTCATCAAAATTGATATAATAATTTCAAAATCAAAAAAGAGGGTCTGAAGCTGATGATTTATGCTATTTTTGAAAAACTATGTCCTAACTGTCATGGAGAGATTTCTTCCTATAGATTAGAAAAAGGTCTGCCTTGTAAAAAATGCTTACCTGACGAAGATTTAGACGTATGCCAACACGTAAAACCAGGAGATATAAAACAGTTATGTCATCTTCAAGACACGCTCCAAACATGGCAAGAACATTTCCAAACCTATATAAAATCAAAACCATGGAACTTACAAAACACATGGGCAAAAAGAGTTTTTTTAAAGCACTCCTTTGTCTTACTTGCACCAACAGGAATAGGAAAAACATCATTTGGTATATCTATGGCTTCATTTTTGGCAAAACAAGGCAAAAAATCCTACATCTTACTCCCTACAAAACTACTAGTAAAACAAGTCTATGAAAAAGTAAAAAAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 290882-291432 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 290882 29 100.0 36 ............................. TGCCATCGATTGTTATAATCTCGGTCCACTTTCTTT 290947 29 100.0 35 ............................. TATGCTTTTAGACTAAAATACATTGATAAAATCGA 291011 29 100.0 37 ............................. TTTATTGGAGTTAAATAATGTTACAAATCATCTATGG 291077 29 100.0 36 ............................. TCTTCAAAATAATCATACTTTAACCACTCTAAACCT 291142 29 100.0 35 ............................. ACTTTTTCAGGTCAGATAACAGTCACAATCTCTCC 291206 29 100.0 36 ............................. CAGGTTTTTCGTATGGTATAAAAATTCTATTTTTTT 291271 29 100.0 36 ............................. TTTTTTTAAATTCATAATTATATTATCACACTTTTG 291336 29 100.0 39 ............................. TCTCATTCTACTCTAAAAATGATGTAAAAAGCATAGAGG 291404 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 36 GTTTTGTCTGAACTATGTGGGATAGAAAG # Left flank : CAAAGAAGCATATAATACTCTTATACGAGATTTAAAGCAATTTAAAGTAGAATACCTTGACAAAAGAATAAGCAATGTATAAAGTCCGTATCCTTAATGGTGCGGGACAGATTAACAGGTTAATAGACCTGTTCAATCTGGATACGTGGGCTTTCTACCACGTGGGGCTGGCTTAATGCCACGGCTGGGGGCGTTTAGTCCATAAGGCCGAGACCCTACCTGCATAGTTCAGCTTTAAAAAATTAATGTGAGATAGAAAGGAGAAATTAATTGATATTAGGTATCATTTAGCTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGTAGTGATGCGGGTGAAAGTGGGAATATAACAGAAAATATATTTGCATTATGTGAGCTACGATGCAGTTAACCTCAATTTGCGAGCGGTTAACGAAAATAAAAACTACCTGCAAATCAGCGTCATTACTTGATTATTTAAATTTTTTTATTTTTAAAAATTAACGG # Right flank : GCTACTCTACCAATTCTATTGCGGTCATCATAGCTTTGGCTTTATTTACAGTCTCAAGCCATTCTTTCTCCGGGATAGAGTCTGCTACTATACCAGCTCCTGCTTGGATGTATACTGTATCGTTTACTATTACAGCTGTTCTTATAGCTATAGCAGTATCAAGATTGCCATCAAAAGATATATATCCAACTCCTCCTGCATAAATGCCTCTTTTATCCGGTTCTAACTCTTCTATTATCTGCATAGCTCTTACTTTTGGAGCTCCGCTTACAGTTCCAACTGGAAAAACAGACTTAAACACATCTAAAGGATGTAATCCTTCTTTTAAAACTCCGGATACATCTGAAACTATGTGCATCACATGAGAGTAGTTTTCTATATACATAAATCTATCAACTTTTACACTACCTCTTTTTGCTACCTTACCAACGTCATTTCTTGCAAGGTCTACAAGCATAAGATGTTCAGCTCTTTCTTTTTCATCGTTTATAAGTTCTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACTATGTGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 757155-755556 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 757154 29 100.0 36 ............................. CGCTTGCTTAAGCAAGCGATTGACTTAAAGAGCGGT 757089 29 100.0 36 ............................. ATAGGCTTTCAACTTGCTTTCTTTTGTTTCAACCAA 757024 29 100.0 36 ............................. GTGATATCCACTATCGTAAAAATTAACTATTTTCAT 756959 29 100.0 37 ............................. TCAATAGCCACATATATAGCTTTGAATTTTGTTACAG 756893 29 100.0 38 ............................. TCAAGTTCATTTGGAATTATAAATTCTCTGTTTTTATA 756826 29 100.0 36 ............................. TAAAATACCCATAAAAGACCCATAAAAGTCCATAAA 756761 29 100.0 36 ............................. AAAGTAATCATATATATAGAGATGTTTTACTATATA 756696 29 100.0 35 ............................. TAGCTATACAGAAATTATCTATTATATTTGCTGTC 756632 29 100.0 37 ............................. AGATATTCCACTTATAGGAACTGAAATATCAAAATAT 756566 29 100.0 36 ............................. TAGGCCTTGTTAAGCAATCTTCTGAAAAAGATTGCT 756501 29 100.0 36 ............................. TCTTCACTGTTTGCGGCAATCCATTATCGAGTTCAA 756436 29 100.0 37 ............................. GAGTGTGAATAAATCATCTGTATCAACTCTCTAACAA 756370 29 100.0 35 ............................. TCTCCAGTCACGTAATAGAAGTTTGATAAATGAGC 756306 29 100.0 36 ............................. GATTCTTCTCTAATCACTGAGAGCATCTCTCTCAGT 756241 29 100.0 37 ............................. GCTCCTTGCGGGCGGGGCTTCTGTGAAAGTCTCTTTA 756175 29 100.0 37 ............................. CTATAAATTAAATAATAAGGAGGTTTTAGCCCAAGCT 756109 29 100.0 38 ............................. GCATAAGGAAATAGCTGTGAGATGTCAACAGAACTCGG 756042 29 100.0 37 ............................. ATTTCACTTTTGTAAACAATATCACTGATAGTTCCTA 755976 29 100.0 37 ............................. TCTGCTTTTATGCCTGCCTGTAATCCCAAATTGTTCA 755910 29 100.0 35 ............................. GAAGCCTGAGTGGCTTGAACAGCATACTCTGATAA 755846 29 100.0 36 ............................. ATGTGATAAACTCTTTTACATCTTTATTCATTTTTT 755781 29 100.0 37 ............................. ATTTGTCAAATATGAATGGAAGATGTACTACTTGGAA 755715 29 100.0 36 ............................. TGAAGTGGCGTACTGTATGGTATAAAAACTCTCTCT 755650 29 100.0 37 ............................. AGATATTGTCCTCTTGAATACTTTATTCCCCAAAGTT 755584 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.9 36 GTTTTGTCTGAACTATGTGGGATATAAAG # Left flank : AAATAGAAGTGCTGCAGCAAGTAGATTTTTAGAGCAAAACGGTTTTAAAAATGTTTATAACTTAAAGTATGGAATTATTGACTGGAAAAGAAATAACCTTCCGGTAGAGTATGGAATGAAAAAGTAAAATGTTTTTAAATAGAAAAGTTGTATTTTTCGAAAAAGTTTTGTAAAATATTTTTAGTAGTTAATAGTTGGAATTTAAACACCTTGACAAATGAATATGTTAAATCCCACTTAAGGTTTTGACAATTTGGTGAAATTAGCTTATTGATAATGATTATTATTAAGTTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGCAGTGATGCGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGCTACGATGCAATTAACCTCAATTTGCGAGTGGTTAACGAAAATAAAAATTACCTGCAAATCAGCGTCATTACTTGATTATTTAAATTTTTTTATTTTTAAAAATTAACGG # Right flank : AGAGATATGTTTTTATGCAAAAATTTATAAAAAGTTATCCAGAAAGCTTTTTTCTATACCTAACACTTTTTTGTTAAGATTTTTTGGATTTTCTACTTGATAGACATAAACACTGTCTTCAGACGGTGATATAACCTCTTTTACTTCGGATAGACATTGTGCAAGTTTTCCTTTTGATATTTCCCCCTCAAATGTAGAAAGCTGAGTCCAAAATAAATATTTTCTCAGTATTTTTCTAACTTTATTTAGTCTGTTTTCGTCAGTTATATCGTAAGTTATTATTACAAACATTTTTACCACCAAGCTTTAAAAGGTTTATAAATTTCATCACCTATTAGATGCTTTATAAGTTTATAACACTCTAACCTTATCAATTGTCTGTAAGATACATTTCTTTTTAATCTTCTATGCTTTACGGTTTTTGATAATCTTTCTTCATAAGCTTTCAAAAACTTTTTTCTTCCATTTTCGTTTAAATATGTATAATTTAAATCTTTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACTATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 788741-788247 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 788740 30 100.0 38 .............................. GTAATTATAATTAAAAAAAATATAAATACACAAACATA 788672 30 100.0 37 .............................. GACTTTTTGTCAAGCAATGTTATAATCTATTATAACA 788605 30 100.0 32 .............................. GATAATACTCTTTACTTAGTAGGAGATGACTT 788543 30 100.0 36 .............................. ATAATTATAATTAATATATACATACTAACGAAAAAC 788477 30 100.0 37 .............................. TATTCTTCATCTTTCCAAAGCTTTTATTTTCTCATAA 788410 30 100.0 37 .............................. TGCGAATATTCGAATAATGTCTTTATGCGAATAATGT 788343 30 100.0 37 .............................. GGAATTCAACAAATGAAACAAGCTTCTTTTCTGGAAT 788276 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Left flank : AGTTTATGATGCAAATGAAAAAAGAGTTAGTAAGTTTCATAAAATTTGTAAAAAATATTTAACCCATGTTCAAAATAGTGTTTTTGAGGGAGAGATAACAGAGGCAAATTATAGAATGCTTATAGACGAGTTAAGGACTATAATAAACAACGATGAAGACTCTGTCTTAGTCTACAAGTTTAGAACTAAAAAATATTACGAAAGAGAAGAGTTTGGTATCAAAAAACCTTCATCTGAAGACATTTTCTTTTAATCCGAATTGTTGTCGTCGTCCTATCGAAAATGGCAGTTTTTGAGTCTCAATTAGAATGGTTTAATTGAGATTAATTAAACTAAGTGATTGAAAAATAATCACTGTCGATCTCCAGTGATTTTTGCAGGATCAAAGGTCGACAGGAAAATTGCTATTTCAGTTGCATTTTTTGGAAAAGTGTATTATAATACCTAACAGTTGATAATAAAGGATTTGAACCTTGACAATAGAATAGGCTAAAAGAAGG # Right flank : ACTATTCCCAAATTGGTAAAATATCTAAAACAAAAAATTAGGATAAAAGGGTGAGGATTAAGATAAAGTTAACTACAGATAAAGATTATGTAATCCTTCCAATACATCATAATCACATTATTCAAAGTATGCTTTACAATAGTCTTCCCAAAGAAGTAGCCAAATTTCTACATGATGTAGGCTTCTTTTATCATAAAAGACAGTTTAAACTTTTTACATTTTCCAAAATACAATCTCAACATTACAATATTGCAAAAGAGAAAAGTCAAACAAAACACATAGAATATAAAATTCCAATTTCTTTATATATATCTTCTGCTATAGGTGATTTTACAAAGAGCTGGGGAGAAACATTTTTAAAAAACGAAGAAGTTATATTAGGTAAAAATACACTTTATCTTGAAAGTATAGAAGTTCTTCCAAATCCTGATTTAAAAGAAGAATTTAAAATAAAAACCCTATCTCCAATAACAGTCTATAAAACATTTGAAAATGGTAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 968827-969464 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 968827 31 100.0 37 ............................... CTACATCACTTTTTTAGATTTGTCAAATCTAAAGTGA 968895 31 100.0 36 ............................... CCATAACACACCTCCTATTTAAATTTTTTTTGGGAC 968962 31 100.0 36 ............................... TACTCTAAATAAAGTTTTTCAAGTCCAGAATCAAAA 969029 31 100.0 35 ............................... TATTTTTCCCATTTAGCTTTCCTATATACACTCCC 969095 31 100.0 37 ............................... AGGGTTGTAAACGATGAAGTGGGGGAATTGTCCCCCA 969163 31 96.8 37 ..............................T TTGACAGCATCACGCAAAAAGATGAAAGAAAGACCCG 969231 31 100.0 35 ............................... TCAGATGCACTATCAGAAGAAAGAGATTTGTCTTC 969297 31 100.0 38 ............................... ATTGCTTTTCTGATTGCAATAAGTCCAACCAAAGCACT 969366 31 93.5 37 .............................GT GATTTAAAATCTGTTGTGTGAATAAATCCTTTATTTG 969434 31 83.9 0 .............T............TTC.T | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 97.4 37 GTTTTTCTCCCGACTATGAGGGAATTGAAAC # Left flank : TATGAAAGTAAAAATTCAAAGAAAACAAAAGAATTTTATATTGAGTTAAATGAGTATTTTGAATTTGAGATAAAGAGGGTACAAACAGATAACGGGAGTGAGTTTTTAGGGGAGTTTAACAAGTATTTAACGGATATAGGAGTGGAGCATTACTTTAGCTATCCAAGGAGTCCAAAGACTAATGGTGTTGTAGAAAGATTGATAAGGACAATAGAAGAGGAGTTATGGTTGATAGAGGGATTAGATTACACATTAGAGGAGATGAATAAGAAGTTAAGGAAGTATGTAAGGAAGTACAATTTTATAAGGCCACATCATTCTTTAGGATACAAAAGACCAGCAGACATTGTTTATGGAGTATGATAAAATTTTTAGGTGAAGGTGTTCACGATGTATAGAACTCATACATCCGGTTGCATTTTTTGGAAAAGTGTATTATAATATCTAACAGTTGATAATAAAGGATTTGAACCTTGACAACCGAATAGGCTAAAAGAAGG # Right flank : TCTCTGTTTCTCTTTTTTGTCTAAACTGTGCTAAAATCTTTTAAAGAAAGACAAAAAGAGGAAAAAAATGGGTTTTAATTTGGGTGAAATTTTGGCAGTAGCTTTGCCAGTTCAAGGGGAACAAATCAAAAAAGGTCAAGTTTACGCAGTAAAAACAAAAGCATTCTACTTAAAAACCAATATCAAGCTTTACAATCAAGACGATTCTGAACGAAAATCAAGACCCATAATAATAATCGATAAAAACCAAGATGTAATAAAATTCATCGCACTCTCAACCACTCCTTCTTATAATTTAAAAACAGGAAAATATAGAAAGAGAATAAGCTTAGAAAACTGTAAGTTTGAAGGAGATGGATTTTGTGCTAACATCAAGATAAAAAAAGAAGCTTATATTTTCGTTAGAGATAATAGAGACAGATTTTATATCAATGAAAAAATATTTAAAGATTTAAAAAGTAATCGTGAAGCTAAACTTTGTGGAAAATGTGAAAACTTTG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCTCCCGACTATGAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 6 1002144-1002836 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1002144 30 100.0 37 .............................. TCATGTAAATCTCTCAATTGTCACTTGAGAATAGCAT 1002211 30 100.0 36 .............................. TTGCGTTCAAAATTCGCAAACTATTGAATACTACTG 1002277 30 100.0 36 .............................. CGCGGTTTTCAAGACTATTGAAAAAATCAATAGAGG 1002343 30 100.0 36 .............................. TATACTTTAGGTCTATTCCGTTTTTTTCTGTTGAAA 1002409 30 100.0 36 .............................. GTTGTTCTATCGGAGCTTTTAGTTCAAGCTGTACCA 1002475 30 100.0 37 .............................. AAACTTCAATTAGCTGGAGTTTTAAATGGTTTAAATA 1002542 30 100.0 36 .............................. ATTTTTGATATGTAAATTGTAATATAAGATTAGTTA 1002608 30 96.7 36 .................G............ TTGTTGTTTCTGTGGGTTCTTTCCCTGTCCTGTTGG 1002674 30 100.0 36 .............................. CGTTCAATACAGGGTCGTCGTATGCATTCTGATGCG 1002740 30 93.3 37 ........C........G............ TTATTCTTGCTGGTTTGCGAGCTTCTTTAAGGAGCTC 1002807 30 83.3 0 ........T..A.....G..........GG | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.6 36 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : AAGAGATGCCATAGAACGCTTAGGATTGAGTGAAGATGAAAGAGTAAAAGCTCTTGATATAGAGCTCCTTAAGAGGCTCAAAAAGTACGGACCACCTGCATACAGAGAAAAAGAAAGACCTGATTACTGGTGGTGGCATCTGGACGACATCTATAAAGGCACTTATCCGGAAGAAAAACTCCCCGGTCATCTTAGAGACTGGAATAATGGCAAAAATTAAAGAAATACAGCTTATTACAAAACTGTTATTAACTACCGAATTGCTGTTGTCGTCCTATCGAAAATGGCAGTTTTTGAGTCTCAATTAGAAGGGGTTAATTGAGTTAATTGAGTTAAGTGATTGAAAAATAATCACTGTCGATCTCCGGGGATTTTTGCAGGATCAAAGGTCGACAGGAAAATTGCTATTTCAGTTGCATTTTTTGGAAAAGTGTACTATAATGTCTAATAGTTGATAATAAAGGATTTGAACCTTGACAACCGAATAAGCTAAAAGAAGG # Right flank : GGATTTTTCTGAAGGTGTTGCATAAAAAAGGAAAATTTGTTATACTTTTTATAACTTTTTTAAAGACTTTGACAAGTGAATAGGTAAAGCCCGCTTAAATTTTTGAGGAATAAAGAAATTTTGCTATTTGATATTAGGTATCATTTAGTTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGTAGTGATGCGGGTAAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGCTACGATGCAATTAACCTCAATTTGCGAGCGGTTAACGAAAACAAAAACTACCTGCAAAGTAGCGTCATTACTTGATTAATGGATTTTTTTATTTTTTAAAATTAACGGGTTTTTTCCCGACTATGAGGGAATTGAAGTTCTATAGACACGAGCTAGCGATTGCTGGTAATCTCGTTTTTTCCCGACTATGAGGGAATTGAAGGGTATTGCCGTCTAGAATATTTCACTCCCCACATTTGTTTTTTCCCGACT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 7 1003192-1003414 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1003192 29 100.0 36 ............................. TTCTATAGACACGAGCTAGCGATTGCTGGTAATCTC 1003257 29 100.0 36 ............................. GGTATTGCCGTCTAGAATATTTCACTCCCCACATTT 1003322 29 100.0 35 ............................. GTGTTGTTTATTGTATACGAGATTTTTCCAGTGAA 1003386 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 100.0 36 GTTTTTTCCCGACTATGAGGGAATTGAAG # Left flank : AGGAATTGAAACCGTTCAATACAGGGTCGTCGTATGCATTCTGATGCGGTTTTTAGCGTGCCTATGAGGAATTGAAACTTATTCTTGCTGGTTTGCGAGCTTCTTTAAGGAGCTCGTTTTTAGTGTACCTATGAGGAATTGAAGGGATTTTTCTGAAGGTGTTGCATAAAAAAGGAAAATTTGTTATACTTTTTATAACTTTTTTAAAGACTTTGACAAGTGAATAGGTAAAGCCCGCTTAAATTTTTGAGGAATAAAGAAATTTTGCTATTTGATATTAGGTATCATTTAGTTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGTAGTGATGCGGGTAAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGCTACGATGCAATTAACCTCAATTTGCGAGCGGTTAACGAAAACAAAAACTACCTGCAAAGTAGCGTCATTACTTGATTAATGGATTTTTTTATTTTTTAAAATTAACGG # Right flank : GGATTTTAGCAAGGCTTTTGTATGGTAAGAAGATAGAACTTGTAATAGATGGAACCATAGTGGACATAGCCAATGTAAACAGGGCGAGGACACAGAAGATAAGGAGGGTAAGAGGGAAGGTATGGTGGGCAAAGAGGAGAAGGAAGATAGTTCGGAGAGACAATGGGAAGGTAGTGGAGTTTGAGGAGGTCAGGTATGGCATGTTGATGATGGTGTTATGTGATAGGTGGGGAAGAGTTTATGATGTGTGGATAAGCTTTGGAAGTGTGCATGAGGTTAGGGCATTTAGGGAAAGGAAGAGAAGGAGTTTATGGTTTAGGGAGCTTGTGGAGAATTGTGTGGTGTATGGTGATAGGGGTTATAGGGGTTGTGAAGGTGTGATTGTGTGTGGTAGTAGGGAGATGAGGGCAAAAAGGCAGGTAGTGGAAGGTGTTATAAGTCAGATAAAGCTTTTTAATGCTGGTAGTGGGTGGAGGACTTTAACTTGTGTGCTTGTGTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 8 1005986-1006404 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1005986 29 100.0 36 ............................. TTCTATATTTGTTATTGTTCAAAAAGACGGATATGG 1006051 29 100.0 36 ............................. CACGCTGGATAAGAAAAGGGAAAAGGACATCAGGAC 1006116 29 100.0 37 ............................. CAGTCTTAATTATTATAAAACTGATACAGAAGATAAT 1006182 29 100.0 36 ............................. GTAAACTTTCACTTCTTCGCTTTTTGTTTCTATTAA 1006247 29 100.0 36 ............................. TTTGACGAGAAAATTGCATCTCTCTATACCTCTGCG 1006312 29 100.0 35 ............................. GTAGATAGTATTACAGTTTTGTATAAAGCCATTTT 1006376 29 96.6 0 .....C....................... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 36 GTTTTTTCCCGACTATGAGGGAATTGAAG # Left flank : CACTCCCCAAAAGCTCATAACAGCCAATCCTTCAAGGTCGTGCAACCTACCCTCAAGCAAGTGAACCTCTCTGAATAATCCTCTATCATCAATAAGAGCGTGTAGCTTGAATCCAAAAAAGTACTCCCTCTTGCTGGGTATATATCCTCTATATTCCTCTCCCTTTAAAACTCTTGCCCTCGGTATCCTGATATTCTCACAGACCTTTATAGGTTTGCTGTCTATGAAGTATCTCTTGGGACTCCTACCTGACAGCCCTATCTTTCTAATTATTGTCCGCAGGTAGGGTTCAAGCTTGTGTAGTCTTCGTGAGAACCTTGATAGAGAAGGTACATATGGGAACAGATACGCCGAGTGAGAAATTCCCTTTAAGCTAAACCTTCCATATCAATAAAAAGACAGCAGGGCTACTATAATAGTAGCCCTAAAAACCATCGGAGGTTTTTACCATGGAAATTATACCACCTTACCTACGCATCTACCAACAAATCCTCAAAGAC # Right flank : GAAAACGCGAATCTTACTTTCTTTTGAGAAAGGGATTATTCTCTCATCTTCAAAGATTATCAACTACCATCTTAACGAACTCAAACACTCATCGTATAATATTTAGATTAAAATTTTTTAATTAGGAGTGATTTAATGCATCAAGGGATAGTTATTTTAGACTTTGGCTCGCAATACACACAACTTATAGCAAGAAGAATAAGAGAGCTTCACATTTACAGTGAAATACTTCCTTACAACACACCAGTTGAAGAAATACTAAAACACAACCCAAAAGGAATAATATTCTCTGGTGGTCCTGCCTCTGTGTATGAAAAAGATGCACCAAAACCCGACGAAAGAGTTTACGACTTAGGACTACCTATACTTGGTATATGCTACGGACTACAACTTATAACTCATCACTTTGGCGGTGAAGTTGTAAAAGCAGACAAACACGAGTATGGAAGAGCCGAAATTCAAGTTTTAAACCATGAAGATTTATTCTACGAAATTCCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 1081207-1081818 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 1081207 29 100.0 94 ............................. TTTTATCAAACAAAACTAATTATAGGAGGTGTAATATGACAATAAAACTCTTCAAACATCAGGAAGAAGCTATTACTCTTTATAAACAAAGAGA 1081330 29 100.0 36 ............................. TCGGGATTCTGTTAATAAAATTAATAACAATCAAAA 1081395 29 100.0 37 ............................. TCCCGATCTAGATGCTCAAGCATTTTGTCAAACAAAA 1081461 29 100.0 36 ............................. AAAAAATTAAGATCTTAGAGCTTTCAGCGAATGAAA 1081526 29 100.0 37 ............................. GCAGTCAATGATAAATCTTTGTTTACTCTGTATTTTG 1081592 29 100.0 36 ............................. ATAGCAAAACCTGCTATGCCAAATCAGGTAAATCAG 1081657 29 100.0 36 ............................. TATATTAGAAAGGATTAAGTAATTGAAAAATAAGGG 1081722 29 100.0 36 ............................. TAATAATGCCTCCTTTGATTTTAATTGTTTAATACC 1081787 29 89.7 0 .....T.................A....A | GT,G [1081807,1081812] ========== ====== ====== ====== ============================= ============================================================================================== ================== 9 29 98.9 44 GTTTTCTCCCGACTATGAGGGAATTGAAG # Left flank : TCCTGACCTTAACTGCATGATGATACTCATCATCTGTCAAAACCAAAAAATCACCTTCAAACTTACCGATAAATAAAGGATAACTCATTTAATTTTCTACTAACCATAAAATTTTCATTTAACCTATTATAGATAAGTTTTAATCTAATTTCCAAAGATGTTGCATAAAAAAGAAAAATTTGTTATACTTTTTATAGTAAAAAAAAGACCTTGACAGCTGAATAAGATAACCCTCACTTAAATTTTTGGAAAATAAGGGAATTTTGTTATTTGATATTAAGTATCATTTAGTTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGTAGTGATGCGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGCGAGCTACGATGCAATTAACCTCAATTTGCGAGTGGTTAACGAAAATAAAAATTGCCTGCAAAGTAGCGTCATTACTTGATTAATGGCTTTTTTGATTTTTGAAAAATTAACGG # Right flank : AGAGTAAAAGCTCTTGATATAGAGCTCCTTAACTGGAAGGTTTAGAAATGAAAACTGTAGCTAAAGAAAAAGCTTTAGAAAGATTAGAGATAGCACACTGGCAAATAGAAGCTGGAAAAATAAACACTTTAGGCTCTACTTTATACTTTGCTTTATTTAATTACATGCAGTCTATTTTAGGTGAAGCTCCTGAAGGAAGATGGAAGCACATAGGAATATTAAAATTTTTTCTAAAAATCTGCACAGAAAAAAATTACTTAGATAAATTAACATTGAGAAAAATATCCAAAATTTATGAAGACTTATACCAATACAGATTAAAAGCCGACTATTTAGATGAAGATCTTACAGAAAAAGAAAAAAGAGAGCTTATATTTATATACGAAGTTGTAAAAGAGGTAATTAATAATGGCAAAAATTAAAGAAATACAGCTTATTACAAAACTGTTAAATGAATTAATAAAAATAAAAGGTATTGAAAATATAGAGCTTATTAACAT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 10 1082776-1083474 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1082776 30 100.0 38 .............................. TGGTTGTTTTATGGTTGCGTTTATTATGCTGTCTATTA 1082844 30 100.0 36 .............................. TTTGGTAGACAGCATAGTAGCTCTTACCCGAACCAG 1082910 30 100.0 38 .............................. CTTCTGTTCCTTCATCATCATCAAAAATCAGAGTGTAG 1082978 30 100.0 35 .............................. GGACCTTCACCTTCAAATTTGATTTTCACGCCTGA 1083043 30 100.0 38 .............................. ATTATAGTTAATAAAAAATATATAGGTACCATAAAAAA 1083111 30 100.0 37 .............................. ACATAAAGAAAGGTAATATTGTAGATAAAACTTGTGG 1083178 30 100.0 37 .............................. AACTGCATTATTTGAATATTCAAATATTCGCATAAAG 1083245 30 100.0 36 .............................. TGAATGATGTGTTTATATGAATTATGAATGATGTGT 1083311 30 100.0 37 .............................. TTGTTTGATATTCATTATATGTATTGTTATTGATGTT 1083378 30 100.0 37 .............................. TTGTTTGATATTCATTATATGTATTGTTATTGATGTT 1083445 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 37 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Left flank : AATAAAAATAAAAGGTATTGAAAATATAGAGCTTATTAACATTCCGGATGATGTAGAAGCTGATGTAGGACTGAGAATAAGACTAAGAAATAACTACGACTGGATAGAAGTTAATCATAAAATAAGCGATATTATATGGGCTTTATTTGAGAAGACAGGAGAGTATATTACAGTTTACAGAGAGTTTGACAATTCTGTTGATAAAATTGTTGAAAGTTTTTAGTAAGTATATTTATTTTTAATTTTTTTTACTTACCGAATTGCAGACGTCGTCCTATCAAAAATGGCAGTTTTTGAGTCTCAATTAGAATGGGTTAATTGAGATTAATTAAATTAAGTTATTGAAAAATAATCACTGTCGATCTCCGGGGATTTTTGCAGGATTGGAGGTCGACAGGAAAAAATACATTCCGGTTGCATTTTTTAGAAAAGTGTACTATAATGTTTGATAGTTGATAATAAAGGATTTAAACCTTGACAATAGAATAGGCTAAAAGAAG # Right flank : CTTGTAGATGTAGAAGCCCAATCTCAACAGGAAGGTGGTTTTTCTCCCGACTATGAAAGAATTGAAGAATTCTACCCTCGATTTCATCAATTACTGCTACTTCGTTTTCTCCCGACTATGAGGGAATTTGTCTGATTTGTTGAAAGATTTTGATATTGACCTACTTTTTAATATATAATAATCATCACAACTTTTCGGAGATTTTAAGTTTGGTTTACGAAGCATTTTCAAGAAAGTATAGACCTAAGTCTTTTAAAGAAGTTATAGGTCAGGATTTTGTAGTCAAAACCCTGAAAAACGCAGTCAAACTGAACAGAGTTTCCCATGCTTACATATTTGCTGGTCCAAGAGGTGTAGGAAAAACCACAATAGCCAGAATCCTCGCAAAAACCCTAAACTGCCTCAATCCCCAAGACTTTGAACCTTGCAACAAATGTGAAAACTGTTTAGAGATAGAAAAAGGCTCTTTCCCAGATATGTACGAGATAGACGCAGCTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 1299664-1301093 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1299664 30 100.0 35 .............................. TTTCTTCATCTTTAAGGTAAAAATTCAAACCTGTC 1299729 30 100.0 37 .............................. CTTCCTTTTTAAACGGTTTGATTCCATAGATTTCATC 1299796 30 100.0 36 .............................. ACATCCTGAGTGGATTCTGTTGTATCCTTTATCATG 1299862 30 100.0 37 .............................. CTTTTATTTTTTCATCTTTAGTAACTATAAACACGCC 1299929 30 100.0 36 .............................. TAACCTTTTTCATAAAAAGATATTGTTTTTATATCT 1299995 30 100.0 38 .............................. CCATAATCGTAAGACAGAAAAATATTTTCTGTCCCTAC 1300063 30 100.0 36 .............................. TTCTTTTGAATATATATACTTCAGTTTGAAGTCAAA 1300129 30 100.0 37 .............................. TTTTTCTGATTTTGTTATAATGAAGGAGCCAGTATAT 1300196 30 100.0 37 .............................. TTGTTTGTTTTGTCAGATAGATTGCTAACAACTTCTC 1300263 30 100.0 36 .............................. TTTGACTCCAGTAAACGGCACTATAGAGAGTACAAA 1300329 30 100.0 36 .............................. GCAGTTGCATACATCAATTCCGTCACTATCTTGTGG 1300395 30 100.0 36 .............................. AAAAGATTGCTTGATAGGAACCATGTTTTTTTAATT 1300461 30 100.0 36 .............................. CGTTTTTTGGATCGCAATGAGTTACATACTCAACGG 1300527 30 100.0 37 .............................. ATCACCTCCTTTATTAAATAATTTCTACTGCTGGTTA 1300594 30 100.0 38 .............................. ACTTTCCTATATACACTCCCCCGATTATTGCTTCTTCT 1300662 30 100.0 38 .............................. CACTATTGTATTTTTAGAATCACAATTTGTACTTAGGG 1300730 30 100.0 38 .............................. GCAAATGCTGGCATGAACGCTGTCAAGGCCAAGCCCTT 1300798 30 100.0 36 .............................. TATTTCCCATTTGGAAATAGATGGGTAGATAAATTC 1300864 30 100.0 36 .............................. TGACGAAAACAATGTTGTTATTCGCGAGAACGAACA 1300930 30 100.0 36 .............................. TATACTCGAATTGGGTGGTTGGGGTCCTCCAGTTCC 1300996 30 100.0 38 .............................. CTTCATACATGATACTACCTCCTATAAATATAAAAATT 1301064 30 86.7 0 ..........................TTTT | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.4 37 GTTTTTCTCCCGACTATGAGGGAATTGAAG # Left flank : TTTGTACCTTACCCTTACGCAGCTTCTAACCATCAGTTTTACAATGTTAAATGGCTTTATGATTTAGGGTTGTGTGAGATAGTTGAGGAAAAAGATTTAACAGAAGAAATACTAAAAGAAAAAATAAATCAATCTTTAAACAAAAACTTATTAAAACTACATCAAGAGATAAAAAAATATTCTATTCTCAATTCTGTTGATAAAATTGTTGAAAGTTTTTAGTAAGTATATGTGTTTTTATTTTTTTCTAACCATCGAATTGCCGTCGTCGTCCTATCCAAAATGGCAGTTTTTGAGTCTCAATTAGAATAGGTTAATTGAGATTAATTAAACTAAGTGATTGAAAAATAACCACTGTCGATCTCCAGTGATTTTTGCAGGATCAAAGGTCGACAGGAAAAAATACATTCCGGTTGCATTTTTTAGAAAAGTGTATTATAATATCTAACAGTTGATAATAAACGATTTGAACCTTGACAACCGAATAGGCTAAAAGAAGG # Right flank : TATATCTTTTACTCCCCAAAATCTCTCTAAATTTTTCCCTGATTAACAATCTGGAAAAACTCATTATTAGCATATATAATATTTTCAAATCCAAATTCCGGAGTAAAAACAGCTTGAAAGATATTACACAGTTTCTTAAAGCCAAAGAGACAGGACAAAAAATAACGATGGTATCTACCTACGACTACTGGTCTGCCAAACTTTGTGAAGAAGCCGGAATAGATGCCATACTTGTTGGAGATTCCCTTGGAATGGTTATTCAAGGAAACAACTCAACCCTACCTGTCTCATTAGAGGAGATGATTTACCACACCAAAGCAGTTAGAAAAGGAGCACCAAACACCTTTATAGTCGTAGATATGCCATTTATGAGTTATCATACATCAGTAGAAGAAGCTGTTAAAAATGCAGGCAGAGTTATAAAAGAGACAGGAGCAAACGCAGTTAAGTTAGAAGGAGCTGGCATAGTTTTAGAAATAACAAAAAAATTAGTGTCCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 12 1493362-1494643 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1493362 29 100.0 36 ............................. GATTCGATGTGATTCATTAATAATAAGTACTTAGCT 1493427 29 100.0 37 ............................. GGATAATAAGGAAAAATTTAATAATCTTATAAAGGGG 1493493 29 100.0 36 ............................. CTGGAATCAAAACATTCCACATCCCTGTCTCACATT 1493558 29 100.0 36 ............................. TTGATATTCTATACTAAAATCACTTGTTGGTATTCG 1493623 29 100.0 36 ............................. TGGGTGCTGGAAGGCTAGAAGAAGACAGCTTATCTT 1493688 29 100.0 38 ............................. ATCTCAAGGCCCGCAGCAATTTCTAAATCTTGAATATC 1493755 29 100.0 42 ............................. ATTATCTAACTTATATAAGTGGAAAATGTAACTCTCCCCTTC 1493826 29 100.0 35 ............................. TTTCAGATGCTGTTTGAATAATGGCGCCTGTCTGA 1493890 29 100.0 39 ............................. GATGTTATCGACACAGACGGAAATATTAACTTTTCAAAA 1493958 29 100.0 37 ............................. CATTTCTTTTATAGTGGCTCCCTTCAATGGAAATTCA 1494024 29 100.0 37 ............................. AAAGGTCTCTTTTCATTATTACCCCCTTTTCTAATTC 1494090 29 100.0 37 ............................. CTTAATTCTTCAACTTCAAAAGATTCTTCTTGTAAAC 1494156 29 100.0 37 ............................. AATTAACTCTTCAAAATAACACCAACCATCGTCAGAG 1494222 29 100.0 37 ............................. AGACTCTATGTGACAGGTTTAATAACATTTTGATAAG 1494288 29 100.0 35 ............................. TAAATACACATTTGAATCTCCTTCCGTTAAAATTA 1494352 29 100.0 36 ............................. CTAGGATGTCTCTTCTCGTTAGTCTTTCTAGAAGAC 1494417 29 100.0 37 ............................. CTTAATTCTTCAACTTCAAAAGATTCTTCTTGTAAAC 1494483 29 100.0 37 ............................. AATTAACTCTTCAAAATAACACCAACCATCGTCAGAG 1494549 29 100.0 37 ............................. AGACTCTATGTGACAGGTTTAATAACATTTTGATAAG 1494615 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 20 29 100.0 37 GTTTTTTCCCGACTATGAGGGAATTGAAG # Left flank : TGAAGGTAAAAAAGTATATATAACTTACCATCCGGCTTTTGTATTAAGAAACCCACGAGAAGAGCCTACATTTTTTGAAGATATAAAAAAAGCTTTAGAGCTTGCTTTTAAGTGAGTTTAGTTAAAAAAGTTTTTAGCATACTTATAAAGTATAAAGTGTTGCATAGAAAAGGAAAATTTGTTATACTTTTTATATATATTTTTTAAGACCTTGACAAGTGAATAAGTGAAACCCACTTAAATTTTTGAGAAATAAAGGAATTTTGCTACTTGATATTAAGTATCGTTTAGCTTTGCATCGTGAAAACAGAAAATATATTATTGTAATATTCAAGTATTGATACGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGCTACGATGCAATTAACCTCAATTTGCGAGTGGTTAACGAAAATAAAAACTACCTGCAAATCAGCGTCATTGCTTGATTAATAGCTTTTTTAATTTTTGAAAAATTAACGG # Right flank : GTGAAAAATTTTTATCCTGTGTTATAATGTGGTAAATACTGCTTAATGAGAGATTATAATGTTTGATTTTGAGTTTTCTCGTTTAAGATTAGAGTTTAAAGCATTAAACAGCTTTCAAACACCTTACTTCTTAGGTTCAGCCTTTAGAGGTATAATGGGAAAAAACCTCAAAAAAATCGTTTGCATAAAACCCTTCGAAGAATCCTGTAAAAACTGCCAATTAAAAAACACCTGCCCTTACACAGTCATCTTTGAAACAGAAGAAATCCTCAACTACCCAGCCAAATACGCAATAAAACCACCCTTCCAAGTTATACACCTTCAAGAAAACCAAACTATCAATTTAGACATAACCCTCTTAGGTAGTAGTGCAAACTACTGGGAATTTATAATCTCATCATTTTCAAACACACTAAATTTAGGAAAAGAAAGATACCTAAAACTAGATAAAATATACTTCTACAACCCCATTGAAGAAAAATACTACCCCCTAAAAAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTCCCGACTATGAGGGAATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 13 1580054-1580761 **** Predicted by CRISPRDetect 2.4 *** >NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1580054 31 100.0 37 ............................... ACCTTTTCCGATGATGTTTGAATGAGTGTACCAGTGT 1580122 31 100.0 36 ............................... CTCTTCTTTGGACTAAAACTTTACCAACCATGTTGC 1580189 31 100.0 38 ............................... TCAACTTGTACTAAACCTGGTGATACATAGACCACCAG 1580258 31 100.0 36 ............................... TATAGACTCTCGTAAAAATTGAATATTTTCATTTCA 1580325 31 100.0 37 ............................... ATAGCTTTGCAAGCATTTTGTCATGATTTGCTTGAAT 1580393 31 100.0 35 ............................... TAACATGATTGAAGCTATAGTTGATGTTGATGTTG 1580459 31 100.0 37 ............................... TACTCTTCAAAGTTTTATGAAAGCATGACTATACTTG 1580527 31 100.0 36 ............................... TCTCGAAACTCGAGATAAAACTTATCACTACCGCCC 1580594 31 100.0 38 ............................... CTAATTGGATATACACATTATCTCTTTCAGTGAATATC 1580663 31 100.0 37 ............................... TTAATTAACTGAAAGTATACATCATCTTTTTCCTTGA 1580731 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 11 31 100.0 37 GTTTTTCTCCCGACTATGAGGGAATTGAAAC # Left flank : GTATATTTACTATGCGATGTTTGTAGAGACGTTTTTAAAAGCTGGGATACTATATTACATGTTTAAAAAAGGATACTGGAAGAGGCAAGTAAAATGGAAAACTTAGACTTAGTTAAGCTGGTGATTGTTTTGATAGTTTCTTTTGTGATTATGAAGATGGTAGGATTTGCAATTAGGATGATAGTAAAAATTCTCGTGCTTATAGGTATTGCTTACTTTATTTTTCAATACTTTGTTAGTAAATAGAGTAAAAATCGAGTTGCCGTCGTCGTCCTATCGAAAATGGTAGTTTTTAAGTCTCAATTAGAATGGGTTAATTGAGACTGATTAAGTTAAATAATTGAAAAATAATCACTGTCGATCTCCAGTGATTTTTGCAGGATCAAAGGTCGACAGGAAAAAATATATTCCGGTTGCATTTTTTAGAAAAGTGTATTATAATATCTAACAGTTGATAATAAACGATTTGAACCTTGACAACCGAATAAGGTAAAAGAAGG # Right flank : CTATAAAATCATGCCGACTTTTACATAAGCTAATTTTGTCAAGTCTTTAGCCTGTCTATGAAGAGTTTAGAGATGTTGGTTTAAGCTATAATTGATTTATCGTTGTTTAATCCAAGAAAATAACTCTATCATCATTTTTCAAGAAATACTCCCTACCATTTATCACTAAATACGGCTCTACCCACTTTTTAAATCTAACATCATCTACATTTACCTGATAAGTGTAGGTTATAATCCTATCAAAATTTAAAACAAAATCATCTGAAAACTTTTCAGTATTTTCCGTTAAAAGATAACTTACCCTACAACCTTCCTTCCTCAAAAGGTTTAAAGCCATCCTATACTCAAAATCCGTAAAAAGATAACACTTTCCTTCCCTTGCTACAAACACAACAGGATAAACCTTAGTCTTGATAGTATAAATCTTAGGCCTTAAATCACTTTTACTCAAAAACAGAAAAACAACAAAAGCAAAACAACTAACCAAAACCTTTTCAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCTCCCGACTATGAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //