Array 1 598599-599049 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000003.1 Rahnella sp. JUb53 Ga0304791_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 598599 28 100.0 32 ............................ ATGAATGCCTGACTTGCGGGATTTGTAACAGC 598659 28 100.0 32 ............................ TGGAACGTAGCGAGATGTCGAATTTGAATTGA 598719 28 100.0 32 ............................ AGCGCAGCCGGATTCACTGTAATAATGATGCC 598779 28 100.0 32 ............................ GTTAGCGACAGTTTGCAGCAGGCCATGCCCGT 598839 28 100.0 33 ............................ CTTGATGAGTTTCTTATTTCACAGAACCTTGCA 598900 28 100.0 32 ............................ TGACCACCTTGGTCACCATGCCGCTATTGTGG 598960 28 100.0 32 ............................ TCGAAGACATGTCTCTGCGCAAACAGCTTTGC 599020 27 82.1 0 T........T........C....-.C.. | GAA [599035] ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAAAACCTTGCAGAACGATTTCCTGATCCCGCAGGACAAAGTGAATCCGGTGATTTTTGCCGGTGACAAAGCCGGGCAGAACACCAAAGTTCAGTGGCTGAAAGACAAACAGATTAAAATATTCTACGGCGATTCTGACAACGATATCACTGCCGCCCAGGCCGTGAGCGCGAGGGGCATTCGCGTACTGCGCGCCTCTAACTCAAGCTACAAACCATTGCCGCAGGCCGGTGTGTTTGGCGAAGAAGTGATTGTGAACTCGGAGTATTGAGCAACCCCGTCCTTCGCAGTAAAGAAACAGGGCACCGTTCTGCTCCCACCCCTGCGAAGGGGTGGGCTGGGGTGGGGTATAAATGGCCTTTCAGAACTGACCCTCTTTTTTGCACCATCTCTAACTCCTTGATTTTACTGAATCACGCGAGCTACACAAAAAAGAGGGTATTTCATCCCATAAAGGGATAATCTTTTGCAGTTCAAAGCGTAAACCTGAAAAACCAACT # Right flank : ACTTACTGCAAACCATAAAAACTCCTTGGAAGCAGTATCTCATCTGCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGCCGGGTGTAGGAGCCTGGTTTCTGCCGTAGCACTGCATTGTGTGCTATCGCTTTGTATCACCTTTATAAAACGTTTTTTAACGTATATTGTTCAGGTGACTCAGGCGGGGCAGCCTTCGGGCTGGTCGGAAGGTAGACCGATCTCCTACTCCCGCCTGAGTTACCGCCTGTTGCGTAGGAGCTAGGCGGTAGCAGATATGCAATCTGCCATAGGTCCAGTCAATGAAGACAATAGATACCAACGAAACATCCCCCGATTCATGGACACTCACCGATCGCTGTCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGGCTTTGCATCATGTTGCAAAACGAGCTCGAATACCTTGAAGCGACGTTATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 476886-477274 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000001.1 Rahnella sp. JUb53 Ga0304791_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 476886 28 100.0 32 ............................ TATGTTATATAAAATAAAGGCTCCCGCAGGAG 476946 28 100.0 32 ............................ CAAACGGGACTTGCCTCAGCTAATGCAGTTCG 477006 28 100.0 32 ............................ AGCATTTTTTAAGTCTGCGACACGTCGAGTAA 477066 28 100.0 32 ............................ AGAAGAGCCAATCACAATGGCGCAGGCGGTTG 477126 28 100.0 33 ............................ TTCGACACTTGAAGCCATTGCGTCAAAAATAGC 477187 28 100.0 32 ............................ GTGACAGGCGATGACAAGCATGACGCGAAACA 477247 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACATTCTCAGCGCACGCCTGAAAGCGCTGGTGGCCGAAGGTATTTTGAAAATTGAACCGGCGGCCGATGGCTCGGCGTATCAGGATTACGTACTGACCGAAAAGGGGCTGGCGCTGCAACCGGTGCTGGTCGCGCTGGGACAGTGGGGAAGTGAATACCTGTTTGAGGAAGGCGAAGCCTGTACGCAGCTTGTGGACAATGAAAACGGCCAGCCACTGCGCAAACTGCAAATCCGAGCGCAGGACGGACGGGTGCTGGAGAGCCGGGATATTACGGCGATCATTCCTGAGATTTAAAATTTGAACTCGATCCGCTCCCTCACCTGCGAAGGGTAGAGCTGGAGTGGGGTATTAATGGCATCTCAGTCACAACCCTTTTTTTCGGGCTGCCTCTAACTCTTTGATTTTAATGAAACACATGAGCCGCACAAAAAAGAGGGTTTTTTTGGCAAAACAGGGATAATCTCTTGCAGTTCAAAGCATAAAGCTTAAAACTCAACT # Right flank : AGTGGTGGCGATTCAGGCAAGGTTTGCAGATCGGTTCACTGTCTTACAGGTAGCCGCGTGCAACTCACTGCAAACCATAAAAACTCTCTGGAAGCAGTATCTCATCCCAGCATTTTGCCCATTTTCTATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGAACCCTCGTGGCGGAAGTTTTAATTTCGCCATCGCTTTGTATTACCAGAAAATAACGAATTATTATCGTATATTATTGGTAACTCGGGCGGGGCAGCTTTAGGGCTGGTCGGAGAGGGTAACCGATATTCCTACCCCCGCCTGAGTTACCACCCAAGAGCGTAGGAACTTAAGTGGTAGCGTGGCACGCAATCTAATATTAGGTTCTGTTCAAATGGATATTACTCTTACAAACGAAACATCCCCCGATTCATGGACGCTCACCGATCGCTGTCGTTTGCTGGCAAATGCGCTGGTGAATCCGCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 529000-529569 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000001.1 Rahnella sp. JUb53 Ga0304791_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 529000 28 100.0 32 ............................ CCGTCGATGCCGAAGTTATCGCTAATGTCAGG 529060 28 100.0 32 ............................ TGTAAGAAAATGGTGCTCAATAAGGCGGTGGC 529120 28 100.0 32 ............................ GCAATCATTTTTCCCGCTTCGGTGTGCGGTTT 529180 28 100.0 32 ............................ TATTGTGCCAATTATGGATAATATGAAACTCG 529240 28 100.0 32 ............................ TGCTGACCCTCCCAAATGGGCAGTATTCCAGC 529300 28 100.0 32 ............................ GTGATAATACGGTCATAGAAGGAAAGCTGAGA 529360 28 100.0 32 ............................ TGGCTTCGCGTTCGTGCTCCGGGTAACTGGCT 529420 28 100.0 32 ............................ ATCAATGCCGGCATCCCACAAATCTGGCTTAA 529480 28 100.0 32 ............................ AGAGATCAGAGACGACACTCTCACCGAGCGTA 529540 27 92.9 0 .......................-.C.. | GCC [529559] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTACTAAGATTTAAGTCTTTAAAGTCAAGGTCGTGGGCTCGCCGCCCACACAGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTATCGCAGGCACGACGGACATGTTCTTTCACCGCAGCCTGTGGCGCAAAATCTTGTCGCTCCGCGATGCCTTCTCTCGGTCTTCGAGCCATAGGTCTCGAAGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCATTCCCGATCGAATAAAACCTTCGTTCTGTTTCTTTCCCAAAATCCAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCTGGGATGGGGTATTAATGGCATCTCCGAGCTGACCCTCTTTTTTGCGCCTCCGCTAACTCATTGATTTCACATACTCAGTAAACCTCTCAGAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAAAGCGTCACCCTTAAAACCCAACG # Right flank : ACTTACTGCAAACCATAAAAACTCCTTGTAAGCAGTATCTCATCTGCGCGATTTGCCCATTTTTAATGTGTGGGTATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGCTTAGGAACCCGGTAAACTGAAACGCAAAAGAAAATGCGTGTCGCTTCGCCATATCGATTGAAAAGTGGATTTTTTATCACTTTTGTAATATCAATTGGTGGCTCAGACGGGGCAGCCTTAGGGCTGGTCGGTTTCCAGTTTTCCGATTCCTAACCTCGTCTGAGTTACCACCCATGAGCTTAGGAACTCCGGTGGTAACGTAACGCCTCAACTGGAGCCAATGACATGACAACTCACACCAACGAAACATCCCCCGATTCCTGGACACTCACCGATCGCTGTCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGACTTTGCATCATGCTGCAAAACGAGCTTGAATACCTTGAAGCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 530707-530854 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000001.1 Rahnella sp. JUb53 Ga0304791_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 530707 28 100.0 32 ............................ TCATATAACGGGGCCTCGCATTGTCCACGAAC 530767 28 100.0 32 ............................ AACAAGAAACTCACAGTAAATAGCCAGGCTAC 530827 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACAGAAAGATAAAAGAGATCATCACGTATATCTTGTGGGAACGGTTCGAGATGCTGCGCTGCTCGCTGTATGCCTCCGGTGAGGTGATCGTATGAACAAAGACTGGCATCAGGCTGATATCATTGCGGCAATCAAAAAGAAGGGCACAACAATGGCGGCTGTCTCACGCCGCGCAGGTTTAAGCTCTTCGACGCTCTCAAACGCCTTAACCCGTAAATGGCCGAAAGGGGAAAGACTGATCGCTGATGCGATTGGCGTAAAAGCCGAAACCATCTGGCCGAGCCGATATACCGAAATAAAATAAACCTGAGAACGGCTCCTTCCCCTGCGAAGGGGAAGGCTGGGATGGGGTATTAATGACAACTCCGAACTGACCCTTTTTCACCTTCTCTAACTCATTGATTTAATTAGTGCGCGCAAGCTAACAAAAAAGAGTGTATTTCTGCCAAAACAGGGATAACCTCTTGCCGTTCAAAGTGTAAATCTGAAAACTCAACGG # Right flank : AGATAAAGTAATCAGCAAGTAGGATAATTTTAAAAAAAGCCCGTCTGCCGACCGGCCTTTGACAGAACGTGTATTACTTTATAAGTTTGCCGTTGCCTGCTTTCCACTCCTCATAAGTGGCTTCAAGAATCCAAAGGCAAACTGCCGCTTTATCAGTACTCAGCAAAGACAGACGCGTTTTTTGATAAAACGCCTCAATTTCAGTTGCTGATTTATTTATGGGTCCCATACAGACCAGGTCAGTGCCAACCAAATGAGGCCAATCGTGGGAGTCAATAACCTCAAGTGTCTTGAGCGCAGCGGCGGTATTTGTTGAAAGCGCAGACGATAAAGCAGCTTCGACGTCTTGTGATTGGTTAACATCAGCGACGGCGGCCAGTTCGGGAATTTTATCGAGCCAAACCTGTTCTCCGGCAGCAATCCCCTTCAAAGCGGCCGGCCAGTCAATATTTGCTGCCATTGAATTCATGGCTATGCACAACAGTAATAGGAATAGAACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 532512-533440 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000001.1 Rahnella sp. JUb53 Ga0304791_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 532512 28 100.0 32 ............................ AGTGATGCCGGTCAGTGCAATACACCGACAGA 532572 28 100.0 32 ............................ TGTCTGTCACTGGTGAAACATCGCAAGTTTCA 532632 28 100.0 32 ............................ CTCAGGGGCGGGAATCGTGGGAATTAAATAAT 532692 28 100.0 32 ............................ ATCAACGTGAGGCACGTTATAACGAGAATATA 532752 28 100.0 32 ............................ ATTTGCATCGAGCACCGTATCGCCCTGCGCAA 532812 28 100.0 32 ............................ ATCATGATGTGACATTGAGAATAAATGGCAAA 532872 28 100.0 32 ............................ TGAACTCCTATTAAACACGGAACGTTGAATGT 532932 28 100.0 32 ............................ TATCAGATACGCCCTATTGTATCCATCAGGCT 532992 28 100.0 32 ............................ TCTGTAAAGGCGTTGTTCTTCGCCTCTGTGGC 533052 28 100.0 32 ............................ TGAAATGGCGGCGGCAGGTGTTGGGATTGAGT 533112 28 100.0 33 ............................ CTTTATTCTTATCCCTACCTCGAGATGTATTTA 533173 28 100.0 32 ............................ TTATAATGAAAAGCCACATTCTACATATGGTT 533233 28 96.4 32 ................A........... AAACGGACTACCATCAAAAACTTTTGTTGAAT 533293 28 100.0 32 ............................ AATTCGCCGACAGATAGCCGCACCGAAAACAC 533353 28 100.0 32 ............................ ATTAGCATCGAGCACAGTGTCACCCTGCGCAT 533413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AGGACTGGAAGCATCGATTTCTTTGCTGAAAAGATAGGGGGCATGTTCACGGGTTGCGGTAGCTTTTCCCGTGGCGTTGTCGGTGGTGATGGAGACGCCGTGATGCAAGCCGTGGATCTCAATGCTACCCTCACGGCCTGTTATATCGACAGAGCCACGTATTGTCGTGCCGCTGTCATCCTTTAACCATAAATAAGCGGGGATCGCCATTTCATTAGTCCTTAATTGTGTGAAATAGCAGATTAGCTTTTTAAAAAGCAAATAATTGTGTTTAAACCTTCAACTCATTGATTTTCAGAAAGTGAGTACATTGAACCGATAACTCATTAATCTTCAAATTACGCCCGCAAGCTCATATGTTTGCAGCTAACCCTCTTTTTTTACCCTATCGCTAACTCATTGATTTTAAATCACCGAATTATCCATCAAAAAAAGAGGGTATTTCTGCCAAAACAGGGATAACCTCTTGCAGCTCAAAGCGTAAATCTGAAAACTCAACA # Right flank : ACACAGGGAAAATCTCATTAAACTTTTGAATTTACGAGAGTACGGGCATAGGCAAAGCCACTTGTGCGACCTCAGAGGGATCATTTACCGAAGAGACTGATTTAGCAACAGTAGCTATCGCAAATTATCTCTAACCAGACTGACGCATCCGGGCAGTGACCCCGGACTTGTCTAACTGCTCAAACACCAGGAGTAAACACCTGGCATTCAATAATGGAAAAATATGAAAGCAAAAATGACAGTAGACAAACTTGAATTACGCAACATTAAGTCAATACGAGATTCAGGAAAAATAGGACACAACTTTGATCTGGTCGCAAAGTTGAAAGTCCAGTCACGCTCTATGGGAGCATTTTCTGGCGAAGGTATTGATTGTCCAGATTTACAATGGATTGAAACAGTAGATTGGTACAAGTTCGATACTAATACAGACAAATGGATCCACGTAGGAACCAATCCAAATAATAAAGATTTATACAAAACAAACCCAAAATCGCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 543253-543759 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLYT01000001.1 Rahnella sp. JUb53 Ga0304791_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 543253 28 100.0 32 ............................ TGGCTGAATTAATGCAATTTGCAGAAACAGCC 543313 28 100.0 32 ............................ TGAAATTGGTTATCGGATTGTAGCCGGTTCTG 543373 28 100.0 32 ............................ AGAAACCCGCGCCCGCCGTCGCAGACCCCGCC 543433 28 100.0 32 ............................ ATGAGCTGAAGGATTTCACGCGTCAGCGCTTC 543493 28 100.0 32 ............................ GCAAGCCCATATTCAGTTATGGGAAGACAGGG 543553 28 100.0 32 ............................ GCAAGCCCATATTCAGTTATGGGAAGACAGGG 543613 28 100.0 32 ............................ GCATTGTGAAGCTTCACGATGACGTCATTTCG 543673 28 100.0 32 ............................ ACGCATCACATAAACCGTGGTAGCAGCGTCCA 543733 27 92.9 0 .....................-..A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTTTTGAGGGCAAGCTCTTAAGGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGCCGCAGGCACGACGGACATGTTTCTCGGCTCCTGTGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCCTGAAGCCTCCGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCAGTCCAGGACGAATAAAACCTTCGTTCTGATTATCTTGCAAAATCAGATGCTAAAGGGAGATCTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTATTAATGGCATCTCAGAAATAACCCTCTTTTTGGGGCTGTTTCTAACTCATTGATTTTAATAGTGCGTAAAAGCTTGAGGAAAAAGAGGGTATTTCTGCCTAAACAGAGATAATCTTTTACAGTTCAATGCGTAAACCTGAAAACCTAACA # Right flank : ATAACCGTACGTTTAAAACCGTCCGAAGACGGCTTTAAAGATTTGAGTCAGTCAAAAAGCCATTTACCCGCTCGTGCGGAATCAGCAAGCATTTGAAGAGTTAAAGGGATAGGTTCTTCGTAATCACCGCCACATGAACAAAATGCAAAGATTGAAAATCCTGATGCTTCTGCTGGCCAGTATTTCTCGAAATCAAAGTTAGCGGGATCTACTTTGAATTTATCAAAATACTCTTTCATGATGTCGTCACCTGTTTCACACGCCCACACATAATCGCCGGTAGAAAGACTTGTATTAATAGTGACAGGCCAGCGTTTTTTAGAAAAGAAACCGGGCTGATTAAAGCGTTCATTGTACCAGTCAATGATGTCCTCATTGCTTACCATAGGCGGTCTTTCTCATTGGCAATCGTGTTGTAGCGGTTCGTCGCTTTATAGGCGATGGTAACCACATCGTCAGCTAATATTACCCATCCAACAAAGGGTATCCACCGACCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //