Array 1 7337-6970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000037.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_37_length_41240_cov_159.220271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7336 32 100.0 35 ................................ CTAAATCAGATAGGATTGTTGTTAGGTTTTTACCT 7269 32 100.0 35 ................................ TCGTACTGGTGTATGTTTAGACGACTGATATGCGC 7202 32 100.0 36 ................................ GCAAACGAAAACCTCTATGATTATTTAAAACCATTT 7134 32 100.0 35 ................................ TAGTTGTGCACGTACCATTTCGGCAATGCTTGCAT 7067 32 100.0 34 ................................ ATCTGTAAAACGGAGCTGCCTTTTGCTGCCTCTT 7001 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTAATTTATCTACTTTTAACTTAATCATTTATTTTTTCGATAAATATAGCGGTATTTTGCTTAAGTTTGTCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGATACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTTTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATTTTGTTTTTGGTAAATAATTGGGGGAAAATGAAGAGAAATGGTTCATTTTTTTACTTTTCTTCTCTAAAACAGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : GCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGCGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATATG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28024-27196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000037.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_37_length_41240_cov_159.220271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28023 32 100.0 33 ................................ ATGCAGAATCCTTTGAATACATGTTTAACGCCA 27958 32 100.0 36 ................................ TAACTCATTTTTAACCAATGTACGCAACCTATCCAA 27890 32 100.0 33 ................................ CTCACAATTAGTTTATTATATGTTAGCTAATAT 27825 32 100.0 35 ................................ ACTCACGATCCAACCACGTTAATTAGTAGCGTTGT 27758 32 100.0 34 ................................ ATTGTTTTGAGCGTAGCGAAAAACTAGTTCTTTC 27692 32 100.0 34 ................................ CTACTAATAATCTTTTCAATACCATCTTTACTTG 27626 32 100.0 35 ................................ TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 27559 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 27493 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 27426 32 100.0 32 ................................ CGTTTGTAAAACGAGGGGAAACGGAAGGCGCT 27362 32 81.2 36 ....TCG.ACC..................... TTGTCAATTTAGGTATTGCTATGGCTCCGTTAGGGG 27294 32 100.0 35 ................................ ATTTGAGCGACATATTCTGCGTAGGCTCGTTCGTC 27227 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : GCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 800-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000040.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_40_length_35410_cov_152.702686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 799 32 100.0 36 ................................ TATTTTTTCAACTTTATTATCATACGAACCATTAAC 731 32 100.0 36 ................................ TAGGAAATGATGGCATGTCTGGTAAAAAATTGTGAT 663 32 100.0 34 ................................ CGTTAGAATAGCATCCATTTTTGATGCGCGTAAA 597 32 100.0 34 ................................ CCAGTAAGGTAACTATAAGAAATTTATCTACTGG 531 32 100.0 34 ................................ GGTTTTTATATTTACAACTATTAAGACATGAGTA 465 32 100.0 34 ................................ TCTCATGCGCAGTTGTACTTGATAGTCTAATTCG 399 32 100.0 35 ................................ AATCTTTTCGCGTGGAGCTGTTTCATCGAAAACAA 332 32 100.0 35 ................................ CGTTGGCTGCTAAAGTTCTTACGAATGTTAATGAT 265 32 100.0 34 ................................ CCGGTTCTGCCTAAATTACCTAGCATAGATCGAA 199 32 96.9 0 .................C.............. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GCCCTTTTCCTGTAAGAGCTGGTTATCATCAAGGAATCTTTGAATATACAAAACCATTTCATTAAGCGTTTCTACAAAAATAAAGACAGCATCATGATTTTTGGAAAGCGTGGTCTGTTGCTCAGTAAAAATGTCATAATCTGTTGGTTGGTTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAATTGGTTACACTCCTTTTTATACCTTGTTTCTTATAGGTGTGATTTAATAAACCACTTATTTTAACTTTATGTTATTATTTACAGAAAGACAAACCTTTATTTTTCATATTAAATTAAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTCTTTGTATTTTTCAATAATTTGACATAAAATAGAAGTTATAATCGTATTTTTAGAATAATAAACGGAATAAGGCATATAAAAAATAGTTTTTCTGTAAATATTTAGGTGTAAATCACT # Right flank : TGATTCCTGCCTACCGGCGAGGGAGCCCCCTCAAAGTCGCACCCTGTATAGGTGCTTTTTCGCTGACATCGCACCTTATATATAAGCGCCGCAATCGAGTAGAGGGAAAAGCTAAATAACTTTTCGCCCCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97162-97522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000005.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_5_length_228808_cov_169.809602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 97162 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 97228 32 100.0 33 ................................ AAAAGAATACGTGGGATTGCCAAAAGGAATGTT 97293 32 100.0 35 ................................ CATGCAAGGTGAGCCTGATGCTTTTTCGGACGAGG 97360 32 100.0 33 ................................ TACGCCTGTCGTCACATGCTTCTCTTGGTTCAG 97425 32 100.0 34 ................................ CACTTAAAGCTAATGAGTGTTTTCCATCAAATTG 97491 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCGCAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 72385-71558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000017.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_17_length_115924_cov_140.941475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72384 36 100.0 30 .................................... GAGGAAAGTTCTTCTTCAAGTATTTCCTCG 72318 36 100.0 30 .................................... AAGCTGACCCTGCGCGTTAGCGCAGAAGCT 72252 36 100.0 30 .................................... TCGAAGCCTATCAACTCTAAGGCTTCGTCA 72186 36 100.0 30 .................................... CGCGGTATCGCTATTTAAATAATCATTCTG 72120 36 100.0 30 .................................... GAGATCTTAGCGAAAGTATGTCGCAAAGTA 72054 36 100.0 30 .................................... CGAAAATGCTGACAAAAAAGAGACGGACAA 71988 36 100.0 30 .................................... TTGGTCATAACATTATTATCTTTTGCTTTA 71922 36 100.0 30 .................................... TGACGCGGACATGCCCACGCTATATTTCTA 71856 36 100.0 30 .................................... TACCACTTCGCAAACAAAAAAAGACTTTTA 71790 36 100.0 30 .................................... TGGTTTAACGAATGAGGTTCCGATTGATGC 71724 36 100.0 29 .................................... TTGATCTCTAAAGCTAACTACCTTTTCAC 71659 36 100.0 30 .................................... ACTTTCGCTTCATCTCTATCGATATAGTTA 71593 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Left flank : TGAACTTACTAATTTAAATAGACATCGCTATGAGTAGATTTATGAGAATAATTGTCTTTTTTGATCTGCCGGTTGTTCTTAAAAAGGAAAGAAAAGCATATTCGCAGTTTCGAAAATTCTTATTAAATGATGGATATGTTATGTTGCAGTATTCAGTTTATTCTAGAATTTGCAATGGTGAAGATGGAGTAAGAAAGCATATGAAAAGATTGCGTGAAAATCTTCCTCCAGTAAATGGTGCGATCCGTGCTATGAAAATTACCGAGAAACAATTTGAAAATATGGAGATTTTATTAGGTACAACAGTTGTAGAAGAAGAATTAGGAGCAAAAAAAATAGATTTCTTTTAAAAAAGTGCTTGCAAATTAATTTGCAAGCACTTTTCAGCCTTTATTTCATAAAAATTTAATGAAAAAAAGATAAATATGTGAATAAATAGGATTGTTTTTAAAAATACAAAACCCTTGAAACGGGAAGCATCAAGGGTTTTAGAGCCATGT # Right flank : TGGTTTCCTTAACAATCTTTTGCTGTTTCATCATATCACATTAGAAATAAAACATCTTTAGTAAATAATAAAAGGTTGACAAAAACTAAATTGTCTGTTTGGTATATTAATGTGTATAATTTTAATAGTATTCAAGAAGTGACCTCTTTACCAGGGCAACATACATTTATGATAGAGTTCCACTTTTTTTCGCTAGGATTTTGAAGAAATATCCCCGAGAACTATTTTATACATACTAATAAAAGTTAAAAGTACTGTAATCAAATTATTAAATGGATACCAGCAATGCCAGAAAATAAACATGTTAAACAGCCAAAAAATATTGAATCTAAGTCAATCAATGAAATTTCAAAACGAACAGCTTTTAATCAAGTAACTATTAGGAGGTTTAGGATTCAAATATAATCTGAAATAGTGTTTATTATGCTATACTACTTGTAACAAAAGAGAGCTCAGCATATACATACAATAAAGGGTGTGAAGTTCATATGCGGGAACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 25563-25199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000012.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_12_length_147102_cov_156.486047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25562 32 100.0 35 ................................ TTTATACCTAGATAAAAAATCATATGATAAAATAC 25495 32 100.0 34 ................................ GCACCAAACACCGCCAAGTCAACGTCCAGATGAT 25429 32 100.0 34 ................................ AGCGTTAGATCAGTTTAATTCTGATTATGGGTCC 25363 32 100.0 34 ................................ ATAGTCGATATTTTCGAATTCCCTTGCTATGTTT 25297 32 100.0 35 ................................ CTTTTGAACATCAACAATAGGCAGGTAACCATTGC 25230 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAGTTAAATCGTTTTCAAATATATCACCGAGATCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : GCCGTATTTTTAAACTTTTTATAGTCCGTTTTAGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33327-33029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000012.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_12_length_147102_cov_156.486047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33326 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 33260 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 33194 32 100.0 35 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAAAA 33127 32 100.0 35 ................................ GTCTGGTGCGTGTATTCTTGCACCAACGTATAGTC 33060 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 39793-39098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000012.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_12_length_147102_cov_156.486047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39792 32 100.0 35 ................................ GCGTAATAATCGTGGATATTTCTCTGTAGGTATTT 39725 32 100.0 34 ................................ TCTTTTTTTATACGGAAATATTACCTATACAATA 39659 32 100.0 36 ................................ TTTTTGTTTACTTATTTTAACATCAGCGTGTACGTT 39591 32 100.0 34 ................................ AATATCTATGCAAGCCAAAATTAATACAATACTT 39525 32 100.0 35 ................................ TCGATCGGGAGGTCAACGTGCCATCCTCTAGCCTT 39458 32 100.0 33 ................................ TTCGAGGAGACAGTAAGCGATATGCTGAAACAA 39393 32 100.0 35 ................................ GGCAACGAGATGCTTTAATTGCCCTGTTTCTGGGT 39326 32 100.0 34 ................................ CAGACCCGCCCGTCTGGTCAAATCTAAATCTTAT 39260 32 100.0 33 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAA 39195 32 100.0 34 ................................ AGTAACGTGGACTATGGCAAAGCTGTTGTAAAAG 39129 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAATAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 146859-146159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYV010000012.1 Virgibacillus pantothenticus strain 179-D 6C1 HS NODE_12_length_147102_cov_156.486047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 146858 32 100.0 34 ................................ CATTCTTGAAGTGCGATCACCAGTTTCAAAGATC C [146845] 146791 32 100.0 35 ................................ TTCCTTTGCATCAGATACGTATATCTCGCATTGTT C [146777] 146723 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC C [146709] 146655 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA C [146641] 146588 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC C [146574] 146520 32 100.0 35 ................................ CGCTCCTTCGATTAAGGCTTTGTCGCTTATGCGCT 146453 32 100.0 33 ................................ CTGCCATTCTTTTTTTATTTTGTCTCTTGCTTC 146388 32 100.0 35 ................................ ATCAAATGACTGGCACAAAAAACGTATTGCTTGGT 146321 32 100.0 34 ................................ CGTGTTGGACTGTATACTTGTTGCTTGGTCAATT 146255 32 96.9 33 ...................T............ CATCACATCGTTATAACCAACTTCGTAATTCCC 146190 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGTTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGC # Right flank : GTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //