Array 1 234602-233956 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYIC01000002.1 Listeria monocytogenes strain CFSAN049234 CFSAN049234_contig_0000002, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                        	Insertion/Deletion
==========	======	======	======	=============================	=======================================================================	==================
    234601	    29	 100.0	    36	.............................	TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC                                   	
    234536	    29	 100.0	    71	.............................	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCGTTTTAGTTACTTATTGTNNNNNNNNNNNNNNNNN	
    234436	    29	  69.0	    35	NNNNNNNNN....................	CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA                                    	
    234372	    29	 100.0	    34	.............................	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA                                     	
    234309	    29	 100.0	    35	.............................	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT                                    	
    234245	    29	  96.6	    36	A............................	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA                                   	
    234180	    29	 100.0	    35	.............................	TTTGTTGAATCAACGGATATAGATTTTACAATTTC                                    	
    234116	    29	  96.6	    37	................A............	TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT                                  	
    234050	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC                                   	G [234026]
    233984	    29	  79.3	     0	......A..T....AGA......A.....	|                                                                      	
==========	======	======	======	=============================	=======================================================================	==================
        10	    29	  91.7	    40	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                                                       	       

# Left flank :   CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT

# Questionable array : NO	 Score: 5.56
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.14%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [15-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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