Array 1 249-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTL010000206.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 700860 NCIMB700860-i1-1_scf206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 248 28 100.0 33 ............................ TTCGGTTGATGTTATTATAAAAAGCGTCAAAGG 187 28 100.0 33 ............................ TCCTGCTGGTGTAGTACCATCCTGAATATAACC 126 28 100.0 36 ............................ TAAATGGACGATCGTGGTAGCTATGTTTGAGAGTTA 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 4 28 100.0 34 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GATCCTTTCTGACAACAAAATCAATTCAGATGGTAGT # Right flank : CTGCAAGCCCCTTTTTAAAAAATTTTTTTGCTCTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11891-13568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTL010000034.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 700860 NCIMB700860-i1-1_scf34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 11891 28 100.0 33 ............................ CACTTCTTGCCTTTAATCGTTGCGACTTTGCTG 11952 28 100.0 33 ............................ TGCTTGACATTGTTGACGAATACGGCGTCGATG 12013 28 100.0 33 ............................ TTATTCATTCGATGCTGAAGGTTTGATCGAAAA 12074 28 100.0 33 ............................ TCATGTTTGGAACTCCCTGAGGAGCAAACAGCC 12135 28 100.0 33 ............................ TGTGATCTTGCAAGGAGGGCTTACTAATGAGAA 12196 28 100.0 33 ............................ TATCTCGCCAATTAATCAGAACCACCCTCTCTA 12257 28 100.0 33 ............................ CCCACGGCCGTTCTTGGCCCGGTGTGTTACGCT 12318 28 100.0 33 ............................ TATATTCGGCTTGGCAACTCCACACAGGCTGCC 12379 28 100.0 33 ............................ GGTTCGACTCCCACCTGCAGCATTGCCCGGTGG 12440 28 100.0 33 ............................ TGACAGTCAGTATTGGGTATCGATTATAAAAAG 12501 28 100.0 33 ............................ TCAAAGGTGAAACTGGAGCAACAGGGGCCACTG 12562 28 100.0 33 ............................ TCCTGCTGGTGTAGTACCATCCTGAATATAACC 12623 28 100.0 33 ............................ TTTCTGACAACAAAATCAATTCAGATGGTAGTT 12684 28 100.0 33 ............................ TTCGGTTGATGTTATTATAAAAAGCGTCAAAGG 12745 28 100.0 33 ............................ GTAAGACATGCAAGTAAGACATGCAAGTAAGAC 12806 28 100.0 36 ............................ TAAATGGACGATCGTGGTAGCTATGTTTGAGAGTTA 12870 28 100.0 33 ............................ TGCAAGCCCCTTTTTAAAAAATTTTTTTGCTCT 12931 28 100.0 33 ............................ TTTGATAAGATTATTGAAGATCAAACCAAAAAT 12992 28 100.0 33 ............................ TTCCTACATAATCAGCTGCTAACTTAAATTCAG 13053 28 100.0 33 ............................ CCACGCCTCACAGTCTACCTGGTAGTCATCATA 13114 28 100.0 33 ............................ GATATATCGATGTACCGCTTACACGCTTACGTG 13175 28 100.0 33 ............................ CTTTTTCCGTTTGTCTTAGCTTAGATCCCCGGG 13236 28 100.0 33 ............................ TTCCTACATAATCAGCTGCTAACTTAAATTCAG 13297 28 100.0 33 ............................ TCCGTGAAACCACTAAAAACATGATCCTCTTGA 13358 28 100.0 33 ............................ TGATCAGTGCTAGAATTAAATCAAATCAAAAAA 13419 28 100.0 33 ............................ CCCGAGAGCGTCAAAGCAGGTGGACAGCTCCCG 13480 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 13541 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ==================================== ================== 28 28 99.5 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCTAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACGGATGCCAAGCCAAACGGCTACCGGTCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //