Array 1 50-857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXW01000029.1 Acinetobacter baumannii strain N8 40-N8_1__paired__trimmed__paired__contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ TCTATAACAGCAGGTGAATAGCCCTGCCCCTT 110 28 100.0 32 ............................ AAGAAGAAAAAGGGGTTAAACCTGCCTACCCA 170 28 100.0 32 ............................ TTCACATCTTTTCTTCTGCAACCATGGTAAAG 230 28 100.0 32 ............................ TTCAAATACGGCGTTTCTGCAATGATCGATGG 290 28 100.0 32 ............................ AAGGATAATCAGCACAACATCCGGTTTTAGAT 350 28 100.0 32 ............................ TATTGCGCCATCTGGGGCATGTTCTTTAATAA 410 28 100.0 32 ............................ AGAAACTCGTAGCCTTACCAGAAACCTTATCT 470 28 100.0 32 ............................ ATCCCAGTTGTAAGGAGGATGATCATGGATTT 530 28 100.0 32 ............................ CAAAGCCCAGTTTGATTACGTCAAGGTCGAGC 590 28 100.0 32 ............................ GGTAGTCATTTGTTCCAAGAAAAATGATTACA 650 28 100.0 32 ............................ CCAGCCCGAACAAATGGCACAGCCGTTATTCC 710 28 100.0 32 ............................ ATCAATCATTGCGGAAATCCCGTCTTTATAGG 770 28 100.0 32 ............................ AAATACTGAGTTGATTCCTTCGCTTATGACAT 830 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : CCCAGATGATTTAGAAAAGCAGAATGTCTTGAGGCAGCCCGCGAAAATCG # Right flank : TTAAAGCTGAAAAAGCATTATCAGATAATGCACGTTCGTCATCGCCCAGATGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47819-45609 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXW01000010.1 Acinetobacter baumannii strain N8 40-N8_1__paired__trimmed__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 47818 29 86.2 31 ...AC.......CC............... AGCTGTAACTAGGGGCACACATTCATAGGAG 47758 29 82.8 31 ...AC.......CC..............A CGATCATCATTCAGAGAATTTCTTAAACCTG 47698 29 82.8 31 ...AC.......CC..............A AAGCAGAAACAGCAGAACCCAGAATCTTTGT 47638 29 86.2 31 ...AC.......CC............... TTAGTTAGCCCAACAAGAAATTGATCAAGAA 47578 29 100.0 31 ............................. TTCTTTAATAGGTCTCTTTCATTGCCAATGA 47518 29 100.0 31 ............................. TGTATTGTTGCTGACTTAAACCAATTCTTAC 47458 29 96.6 32 ............................C TTGAGAAATTCCATTCTCTTTGGGTACAGGTA 47397 29 96.6 31 ............................A CAATATAGATATGCTCAGCGTTTTGAACCGA 47337 29 100.0 31 ............................. TTGTAACCACCAGTTAAAGTATTGACTAAAT 47277 29 100.0 32 ............................. TTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 47216 29 96.6 31 ............................A TTGAGAATCCAGTAGGCCGAATAGAAAAGCT 47156 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 47096 29 89.7 31 ...AC.......................A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 47036 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 46976 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 46916 29 93.1 31 ....C.......G................ TAAATGCTCAACTATTTCTGTAGCTAATGGA 46856 29 86.2 31 ...GC....T...C............... TCAAATGATTTAATGAGCTTGTAGCCATTTT 46796 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 46736 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 46676 29 79.3 31 ..CGC.......CC..............A AGCCATTTACTTTGATAAAGCGACACATAGC 46616 29 96.6 31 ............................A GCTTCAACACGTGTGCTATTAGGCGGCAAAG 46556 29 96.6 31 ............................A TGAGCAAATTATCAATTGATCTATCTGCAAG 46496 29 93.1 31 ............CC............... AGACGGTGTTACCTGTAGGCGGTGTCTACTG 46436 29 86.2 31 ...TC.......C...............A TCGTTTGAATAATATGGACAATCCAGCCAAT 46376 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 46316 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 46256 29 93.1 31 ....G.......C................ TCATCACGTAGCCTTTTACACGCATCTTGCG 46196 29 96.6 50 ....................C........ GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 46117 29 89.7 31 ....G.......CC............... ATATATACTATTTTCTCCGTCATTTTCTTTT 46057 29 82.8 31 ...TC.......CC..........A.... GATAGTTCGGAGCATGTAAATCTCCAAAATG 45997 29 82.8 30 A..TA........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [45972] 45937 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 45877 29 86.2 31 ...GC.......C...............A TTATCCAGATAAAACCATATCTACAAAGTGG 45817 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 45757 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 45697 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 45637 29 79.3 0 ....G....T...C.A........AT... | ========== ====== ====== ====== ============================= ================================================== ================== 37 29 88.9 32 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : CCCAGATGATTTAGAAAAGCAAAGTTTCAGGACAAAGTTATAGCGCAA # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [45-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //