Array 1 255456-253962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUI010000057.1 Salmonella enterica subsp. enterica serovar Brunei strain W-S4-Jan NODE_88_length_733757_cov_71.855164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255455 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTGTGCCTTCGCC 255394 29 100.0 32 ............................. GGTCCGAATACGCATTGAGAACAATATAGAGC 255333 29 100.0 32 ............................. TCACTCATTTGTCCTCCATTGCTCACCGAATC 255272 29 100.0 32 ............................. CTACTGAAATATAATGGTACGCCCTGTAGGAT 255211 29 100.0 32 ............................. AGATGAATATGTCTCAGTCCCAGCTGGCAACA 255150 29 100.0 32 ............................. AGAAATCAGGTCGAGTGAGTACGAACCTTATT 255089 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGGCCGTATT 255028 29 100.0 32 ............................. CGTAGAGGGATATTCCACAGGCGAACGCACAA 254967 29 100.0 32 ............................. GCGAGTAACAAAGGTTGAAATGTGCTCATGAT 254906 29 96.6 32 ............T................ TCGCTTGCGCTCCGAATGGGGCGCACACTTTC 254845 29 100.0 32 ............................. TTCGTTCTAAACAGAGATGGTTGGTTAGATAT 254784 29 100.0 32 ............................. AAACCGTTAGACGTGGTATAGCCAGGGTTTGC 254723 29 100.0 32 ............................. AAACCGTTAGACGTGGTATAGCCAGGGTTTGC 254662 29 100.0 32 ............................. CAAGGTTTCTGAAAATGAGCGCGTTTCCGTTC 254601 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 254540 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 254479 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 254418 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 254357 29 100.0 32 ............................. GGAGCACGGTAAACTACTGGCGCAAGGGCCGC 254296 29 100.0 32 ............................. CACCCCCTCGATCCATAACCCCCTTTGTATCC 254235 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 254174 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 254113 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 254052 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 253991 29 89.7 0 A........T..T................ | A [253964] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCGTCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265693-264688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUI010000057.1 Salmonella enterica subsp. enterica serovar Brunei strain W-S4-Jan NODE_88_length_733757_cov_71.855164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265692 29 100.0 32 ............................. CCCGCGCACCTGGCATCGTTCACGTTGAACAG 265631 29 100.0 32 ............................. CCGGTTTGATAATTATAAATCAATTGGCAGGA 265570 29 100.0 32 ............................. TTTTACACACTGGCGGAGGGCGCATCATATCC 265509 29 100.0 33 ............................. CGCGTAAGCATCCCGTCCCGGTTAAAATCAGGC 265447 29 100.0 32 ............................. GCGCAACAGCGGATATAGATTCAACAGCGCTC 265386 29 96.6 32 ............................C GGCCATGCTCGCGGGGGTATACTCCCGCGATC 265325 29 100.0 32 ............................. ATCCCGCGCCACGTCATTCCGCCGCCCTGAAA 265264 29 100.0 32 ............................. CGTAATCAATTTTTAGCGACAGGAGACGCTAT 265203 29 100.0 32 ............................. AAACGCACTCGCTACGATGAGTACCTTGATTC 265142 29 100.0 32 ............................. TAGACCGTATCACAATATCTGGTATTGGATAC 265081 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 265020 29 100.0 32 ............................. GATGATGAGTGGTATCGCAGGGAATGCGAGAA 264959 29 100.0 32 ............................. CTCATCCCACGATAAAAACCGTTCACCTACCG 264898 29 96.6 32 .C........................... GACGTTACCCCATACATGATCCGGGGAGTTCT 264837 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 264776 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 264715 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //