Array 1 828533-826104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDA010000002.1 Roseococcus sp. XZZS9 seq2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 828532 31 100.0 33 ............................... CGGCAGGGCGTTGGTCAGGAGCTGCGCGCCGCC 828468 31 100.0 34 ............................... CGTTACTCCCGACCTCCATGAGCCGATGGAACGG 828403 31 100.0 34 ............................... CTACGGGGATGCGGGGTTGGGCCGCTCCGCTACC 828338 31 100.0 34 ............................... GCGTCGTGGCCTGCGGAGCGCCAACAGGCGGCAG 828273 31 100.0 34 ............................... AGGATCTGCGCGACGGTCGTGTAGTAGAGGTCCT 828208 31 100.0 34 ............................... GCGGCCGACGGGAAGGCGCGGAAGGTCGGCTATG 828143 31 100.0 34 ............................... TCGGCCACGATCGTCGCGACGTTGGCGGTGTCGT 828078 31 100.0 33 ............................... AGGCCACGCAGTCCCCCGCGAAGGTCTCGCCAG 828014 31 100.0 34 ............................... AGCAGGGATGGGCCGGATCAGAGGTCCAGGCCGC 827949 31 100.0 33 ............................... CCGGACCCGATCGTCCCCGTCGAGCGTGACGCC 827885 31 100.0 34 ............................... GCCTGCTCGCGCTCGACCGGCGTGAGCTCGCCGC 827820 31 100.0 35 ............................... CGATCCTGGCGAAGAGCTTGGCGTAGGTGATGCGC 827754 31 100.0 33 ............................... CGCGCACCGTGCGTCACGAAATGGACTGCGAGG 827690 31 100.0 34 ............................... GATGGCGGCCGCCACGTCCGGACCGGCGAGCCAA 827625 31 100.0 33 ............................... AGGGCCTGGGCGATCGGGTCTTGGACCTTGCGG 827561 31 100.0 33 ............................... ATCGGCTTCCAACGGACGGACGGACGGCTCGTC 827497 31 100.0 35 ............................... CAGAGCGGCTGTCCACCGCCTGGCGGCGCTGAGCC 827431 31 100.0 33 ............................... GGCCACTCAACGGGGAGGCCGGCCAGAGGGGCG 827367 31 100.0 34 ............................... GGGCAAGCCTGCACCGAGGCTGGCAGCAGAAGCG 827302 31 100.0 36 ............................... ATCCCCGCTCGTGCTGGGGAACTAGGCGCTTCGCCC 827235 31 100.0 33 ............................... CAGGATTGGTACCGCTTGACCTCATAGATCGGC 827171 31 100.0 34 ............................... CTGGCCCTCGATGTCGGCCTGAGCGTCGCGTATG 827106 31 100.0 34 ............................... ATGCGCCCACTCCCATCCGCTCGCGCCGGATTTC 827041 31 100.0 35 ............................... GATGCCTCGGGGAAAACTCGCAGAAACCCGGCAAC 826975 31 100.0 34 ............................... AGAAAATTGAAAGCCGATAACCGGGCATTCACGA 826910 31 100.0 35 ............................... GCCCATCTATGAGTCATTGCGCTGGAAACCCGGAG 826844 31 100.0 33 ............................... AAGGCCGAGACGCAGCGCCTGATCTCCTGGACG 826780 31 100.0 33 ............................... TCGACGCTGTTGCCGGACGCATTGAGGATGCTG 826716 31 100.0 34 ............................... TGGGCGTAGCTCGCCGCGCGCTCGGCTTCCGTTC 826651 31 100.0 35 ............................... TTCGCAATTGCGGACATGTGGAGTTCCTTCAGGGA 826585 31 100.0 33 ............................... GTGATCTACCTGACGACGCAGTCTGCGGCTCCT 826521 31 100.0 33 ............................... GGACGGAGTTCAGCCGTGAACGCAATCTCAACG 826457 31 100.0 34 ............................... CCGCGTCGTCCGACGGCAGCCAGGCGCCCTACGG 826392 31 100.0 34 ............................... CAGAGCATGTCGGCGAAGAAGACGCGGATCGTCT 826327 31 100.0 33 ............................... GATCATTCGATGGCACCCGTCTCAGGGTTGAAC 826263 31 100.0 33 ............................... ACGTGGCCCGCACCCACCAGAACCTTCTTGACC 826199 31 100.0 34 ............................... ACGGCCGGCTCGCCGAACACGCTCTCGCGCACGA 826134 31 93.5 0 ......................A.C...... | ========== ====== ====== ====== =============================== ==================================== ================== 38 31 99.8 34 GTCGCTCCCTCACGGGGGCGTGGATCGAAAC # Left flank : CTGGAAGTGAGCGCGGCATGCTGATGCTGGTCGCCTACGACGTGAGCACGGAAACCGCGGCGGGCCGGCGCAGGCTGAGGCGGGTCGCGCGCGCCTGCCTCGATTTCGGCCAGAGGGTGCAGAATTCGGTGTTCGAGTGCGAGGTGGAGCCCGCACAATGGACGACCCTTCGCGCCCGATTGATCGGCGAGATCGATCCCGCGACGGACAGCCTGCGGTTCTATCGTCTGGGCGCCGATGGCCGCCGACGCGTGGAACATGTCGGCGCCAAGCCGGCGCTGGACCTGGACGGGCCCCTCCTGTTCTGATTCTGAGCGGTGCTGCGCGAACGGCAAGCGCGCATGGTTTTCGCGGGAGGTTCGCGAGAGAGCTCCGGCGTTTTTCGTCAGGGGCTTGCGGAATGGTGAGGGAGGCAGCGGCTTGTCCTGACGCTGCGGCGGGTGGGGTTCGCGCTGAGGGGGTGGATAGTGCTGTTGGGGCATTTGCTTGAGACTGGGTGG # Right flank : GCGATCAGCGACAGCCGCCCTACACCCCATCCGCACCGAACCCATTTGCCCAAACGGCCAAGGACGATCAGAATCAGCCCAACGACAGTCCAAGAAGAGGAGCACCGCCGGCATGCCAGCCCCAGCGCCCACAGCAGAACTGACCACCCGGGCCGATACCCTCGACGTCATCGTCATCGGCGCGGGCATGTCCGGCCTCTACCAGCTCATCCGCCTGCGGGAGCTCGGTCTCCGGGCCCGCGTTCTCGAAGCCGGCTCCGGCGTTGGCGGCACCTGGTACTGGAATCGCTATCCCGGCTGCCGCTTCGATTCCGAAAGCTATTCCTACGGCTATTCCTTCGACAGCGACCTGCTCAGCGAATGGAGCTGGACCGAGCATTTCGCCCCCCAGCCCGAGACCGAGCGCTATCTCAACCTCGTCGCCGACAAATACGATCTCCGCCGCGACATCCAATTCTCGGCCCGCGTGAAGGCGGCGCATTGGGACGAGGCCGCTGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 204750-203347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDA010000005.1 Roseococcus sp. XZZS9 seq5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 204749 31 100.0 35 ............................... CCTATGCGGCCAACCAGCCGCCGACCGGCGCGCCG 204683 31 100.0 35 ............................... GCGACATAGGGCACGTCGTTCTTCCCGCCTGACAG 204617 31 100.0 34 ............................... GGCCTCCGCGAAACCCTCCGCGAGCGCGGCTATC 204552 31 100.0 35 ............................... CCACTCGATCTCAGCGGCCTCGATCTCGTCGGCCG 204486 31 100.0 34 ............................... TCGGCGAAGCGCTCGTTGAGGCGCGTGACGCGCA 204421 31 100.0 34 ............................... ACGCGCGCGGCTCCGGCAGCTTGGGCCAGCCGTC 204356 31 100.0 33 ............................... GCTGCGATCGGCCGGCAGCCACAACAGCGCCTT 204292 31 100.0 36 ............................... TGGGAGTTGCCCGCGCCGTTGGTGAGGACGCTGACG 204225 31 100.0 34 ............................... CCATCTGGCCGCCACCGCGTCCAGCGTGTCGAGA 204160 31 100.0 34 ............................... TTGCCGGCGTGGATGAGGATGCGGCCGCGCAGCT 204095 31 100.0 35 ............................... AAGCCGATCCAGCACCAGAAGAAGATCTATGACAG 204029 31 100.0 35 ............................... CGTCCGCGCCGACGCTGGGGTGCGGCGGCGCGCAG 203963 31 100.0 32 ............................... AACGACTGGTGGCAGGCCGAGCGGAAACGCAG 203900 31 100.0 36 ............................... GGTCGCCCTGCTGGTCTGGGCTGGCGAAAAGATCAT 203833 31 100.0 34 ............................... AGGCGGTGCATGTCCTGGGCGGTGGGCGAGAAGC 203768 31 100.0 34 ............................... ATCGATGAGGGCGCCGCCGCCGAAGATAAAGGTC 203703 31 100.0 34 ............................... CCCCTGGCCCTGGCCGGGGTAGAAGAACCACACC 203638 31 100.0 33 ............................... GGCGAACTCCTCGATGGCGTCCGCGATGCAGCG 203574 31 100.0 34 ............................... GCGAGCTGCCGGATCCAGCCGTAGATCGGGACGT 203509 31 100.0 36 ............................... CAGAACGTGAATGAGCCGCGTGAGGCGCGGGATGTT 203442 31 100.0 34 ............................... CTCGCGGGCCACGGGGTCGGGAATCTCGGCAATT 203377 31 93.5 0 ...C.........................C. | ========== ====== ====== ====== =============================== ==================================== ================== 22 31 99.7 34 GTCGCTCCTTCACGGGAGCGTGGATCGAAAC # Left flank : AGGCCGGCCCGCCGGCTTCGCCGGAGCCGGGCGGTGGCAGGACCTCGGCCGCGGCGCTGCGCGCCTCGCGCCCGCCGCCCAGATTGGTCCAGGTCTCGGGCAGGGTGACGAGGTGCGGGCGGTCGGCATCGAGGGCGGCCTCGATCAGGCGCCGCGCCTGATCGAGGTTGGCCGCCTTATCGCTGCCCTGGTTCATCTGGATGGCCGAGATTCGCATGGCGGCATCAAGGCACAGGGCGCGGCTTTCGGCAAAGCCCCGGAACGTGGAGGATGGGGTGGGCAGGAGGGCGCCGGCGCGCGGATCGTGACCGCCGCGGCGGCTCCGCGAAGGTGAAGCACTCATGGATGGCCGGCAGGGTTCGCGGAGGCGGTAAGGCGTTGTTTGTCCGGGCTTGCCGGGCTGTGGGCCGAGATCAGGCGGGAAGTTCGCGGGCTGGGGCGCGAGGTTCGCGCGGGAAGGCCGAATAGCGCTGGGGGGAGATTTGCTTGAGACTGGGTGG # Right flank : GACATAGCGAACTGGATCAGGTTGTCCCTCGAAGACCGCCCCTCACGGGGGCGCGAAGCAGGGTCAGCCTGCTCAGGGCCACCGCCGCCCCGACCCGCCGCGGCTCAATGCTTGGGCCAGGAAATCTTCGGCTCCGCCCGACCGGACGGGAAGATAGACGGGTGCTGCTCGGGCAGCGGCGCCGGTTCGGGCTCGGCGGGCAGGGGCAGCGGAATGTCGCGCTCGTTCGTGCCGCGCCAGTCGGGGCGCCGCGCCTCGGGCAGGCGGATCGCCAGCGCGCGCAGCTCCGCGCGGAGGTCGTCGAGCTGCGCCTCGATATTGTCCAGCCGCCCCTTCAGCCCGAAGACCGAGAAGGGCATCACCAAAAGGCACAGCGCGAGCACCAGGACGACCAGCAACGCCACGAGGCCGGTCCATTCGGGCAGTCCCGGCAAGGTCAGCCGGGTGACGAGGTCCTGCAGCATCAGCCCCCCGTGACGCTCATGTGCCGCGCGACGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCACGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //