Array 1 580-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRW01000203.1 Leptospira borgpetersenii strain 56214 Contig203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 579 29 100.0 32 ............................. AACGAGAAACGTATCCGGAAATTCATCTTCCA 518 29 100.0 32 ............................. GAGACCAAAATTCCTGCATCAAATCTCTACGA 457 29 100.0 32 ............................. ATTGCTGAAACGGCCATTGCCCGATCGACTTT 396 29 100.0 32 ............................. CCGGACTTTGTAATCCTTTGAATTTCGTAGAG 335 29 100.0 32 ............................. TTTCGTAGCTATTATCAGACAGAAAATAATTC 274 29 100.0 32 ............................. GAACTTTTCCTTGAACGATCTGTTTGAATTCA 213 29 100.0 32 ............................. AATGAGCCGACCGCAATGGTTCGTTTCCAAAT 152 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAGGTCTTA # Right flank : GGTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 679-830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRW01000204.1 Leptospira borgpetersenii strain 56214 Contig204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 679 29 100.0 32 ............................. CAAATAGCCGCAGAAGTCTCAGCGATCAAGGC 740 29 100.0 33 ............................. GAATGCTTCTTGTGGACCGGTTTGAGGTCTTAT 802 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGAGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : AACGAGAAACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58663-59261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRW01000043.1 Leptospira borgpetersenii strain 56214 Contig043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 58663 29 100.0 32 ............................. AAGGCGATTTCTCTTAGATAAGAGTTAAAATC 58724 29 100.0 32 ............................. TTTAACATTTACTCAACGAACTGTTGGACAAA 58785 29 100.0 32 ............................. GTGCATCAAACTAATCGATCTGGATCTTTGAT 58846 29 100.0 32 ............................. AAAGGTGGTGAAATTCCACTCAAGTTGAATGG 58907 29 100.0 32 ............................. GTGCAATGTAAAAAAGCCGGCCCTCGTTCGGA 58968 29 100.0 32 ............................. TCCGTTCCAACATGAATTTCAAATGCAGATTT 59029 29 100.0 31 ............................. ATCAACAAAAAGCTCGCCGAGGGAATCCTAA 59089 29 100.0 55 ............................. ACGGGACTACCGAATCCGGAGAATGGAAGAACGATAGGAAATACTTTACTGTCGA 59173 29 100.0 32 ............................. AGTAGAATCAAAAACCATCCTTTCATCGTTTA 59234 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ======================================================= ================== 10 29 97.2 35 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAAGGTTTGGTTCGGGGAATTGGAAATCTGGGGAAAATCAACCCGACGGATCTGGAAAGAAAACATCCAAGTTATGATCGAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAATGGAGATTGTCCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATCTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : CAAGTTGAAGAGGACTTTAGAATCAGAAGGATCCAAACGCACATTTTTGAAGTGTTCCGACAAGAATGAGGTTTTTTACTTGCAAAAAGTATGATTTTCTGATAGTGGAAAGTCCTCCAAGCCTTTCCTCCTCCCAAAATTAGGGAAAACTCATGCAACGCTCTCTATAAATCACTTGCAGGTGTAAGTTTTACGGTGGATTTGTCGGAATTCCGACAGATTTATATTAGAGTTGTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGTTAATCCGAATCATGGAATTTTTCAACAACT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20613-20082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRW01000064.1 Leptospira borgpetersenii strain 56214 Contig064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 20612 29 100.0 32 ............................. GCAACTCGCGCAATCATCGGAGCATTTCCAGA 20551 29 96.6 32 ............................T CAAAGTCCCAGGCACATACATTTGGGTCGTTT 20490 29 96.6 32 ............................T GAAAACTGGAAGTCAGTACGAAGACAAGGTCG 20429 29 100.0 32 ............................. TCGCCCCGATCAAATTCGCCGGACAGGGTGAA 20368 29 100.0 32 ............................. TAAGATTCAAGAGCAGCCTTTTGCACTTCTCC 20307 29 100.0 32 ............................. GTGAAGGCACTCGATCCGCGAACCGGAAGGAT 20246 29 100.0 33 ............................. TTTTGTGCGAGATGGGAACCGGCGAGTGTTGCG 20184 29 96.6 45 ..T.......................... TTATCGTTATACGAAATTCCACTCACTTCAAGATCACCTGATTTC 20110 29 93.1 0 ..T.........................C | ========== ====== ====== ====== ============================= ============================================= ================== 9 29 98.1 34 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCACATGCGTGGGGTTGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //