Array 1 8183-14522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEO01000131.1 Xanthomonas oryzae pv. oryzae strain DXO-052 contig_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8183 31 100.0 34 ............................... ATAAGCACCTATGGTTCAGTGTTGATCACGTCTC 8248 31 100.0 37 ............................... AGGTGCTAAGACTGTTTATAGCGTGATTGCTGATGCG 8316 31 100.0 36 ............................... TCCTTTGCCAAGTGCTGCAAGTAGTGCTCGATGGAC 8383 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 8449 31 100.0 36 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGCC 8516 31 100.0 35 ............................... ATGGTCGCACGAGCCGAACGGTCATTCCAGCGACC 8582 31 100.0 35 ............................... TGCCGGGTCTGTGCTGGTGCACTCTGGCAACTCTG 8648 31 100.0 36 ............................... GATCTGCTGTATGCTCTGCGTGACAAGGACAACCAC 8715 31 100.0 35 ............................... AACTGGAGACTGCATATTGATGTGCCGTCAGAGAC 8781 31 100.0 35 ............................... TTCCGATTGTTTCCTGCTGCTATGGCACTGCTGGC 8847 31 100.0 34 ............................... CTCTGGGACACGGCGGATATGGAGATGTGGGAAA 8912 31 100.0 34 ............................... TATTCGACATCCTCAAGCACAAGGGTATAGAAGG 8977 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 9041 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 9107 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 9172 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 9238 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 9305 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 9371 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 9436 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 9503 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 9569 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 9634 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 9699 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 9764 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 9830 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 9895 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 9959 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 10024 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 10090 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 10157 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 10223 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 10288 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 10354 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 10420 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 10485 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 10549 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 10614 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 10679 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 10745 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 10811 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 10877 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 10944 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 11011 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 11077 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 11144 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 11209 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 11274 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 11341 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 11407 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 11473 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 11540 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 11606 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 11672 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 11741 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 11808 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 11873 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 11940 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 12005 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 12071 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 12136 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 12199 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 12263 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 12327 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 12393 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12458 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12523 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 12588 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 12654 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 12719 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 12784 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 12850 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 12915 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 12982 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 13048 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 13117 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 13183 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 13247 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 13313 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 13377 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 13442 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 13507 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 13573 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 13641 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 13707 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 13773 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 13839 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 13904 31 100.0 33 ............................... TTGGTCTGCGATACTACTACTGGAACAGTGTTA 13968 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 14034 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 14100 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 14165 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 14230 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 14295 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 14361 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 14427 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 14492 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 97 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //