Array 1 24807-26575 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTS01000018.1 Aggregatibacter actinomycetemcomitans serotype e str. SA2876 contig0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24807 28 100.0 32 ............................ ACGTTTACGTCCCGATGGTAATTGTCCTTTAA 24867 28 100.0 32 ............................ TATCATAATCATGTCATAAACTTGTTCAAGCA 24927 28 100.0 32 ............................ TACAAATTGGTATAAAAGTGATTTTAGAAATT 24987 28 100.0 32 ............................ CCCAAGGTTTAGAGGGTGTGTTTATGGACGTT 25047 28 100.0 32 ............................ TCCTGATATGGGTTTCGTTATTAACACAATTT 25107 28 100.0 32 ............................ AAACGTAATAGGAAAACCTATATCCTTTTGTT 25167 28 100.0 32 ............................ ATTGAACTTGCTTATGAAATGAGTAAAACAAA 25227 28 100.0 32 ............................ TACAATCAATGGATAGGTTGGAAATTTGTAAA 25287 28 100.0 32 ............................ ATAAGGAAAAACAATATGAAAAAATTTATTTA 25347 28 100.0 32 ............................ TACTGTTGCAAAAAAAATGTAGTTTTCAACAG 25407 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 25467 28 100.0 32 ............................ ATTGATATTGACAACTGGTGTGATAAAAAATG 25527 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 25587 28 100.0 32 ............................ TAACAGAAATAAGAAAAAAGGTGAAAGAATTA 25647 28 100.0 32 ............................ TCTCGGAAAACAGTGTGTGCGGTAATTTTTGC 25707 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 25767 28 100.0 32 ............................ TACAATGTATCTGGGACCGGTTTAAATAATTA 25827 28 100.0 32 ............................ TATTGGGAATAATATGGCTGCGCCGGTTATTA 25887 28 100.0 32 ............................ TCCTCATAAGCTTTGCGTCGCTCTGCTGCGCC 25947 28 100.0 32 ............................ TGAAAAATACGGTAATGCTAAAGAAGATTTAA 26007 28 100.0 32 ............................ TGCAAACGCTTATTATGATTAAGAAACAAAAC 26067 28 100.0 32 ............................ TTGTTTGAGTTTCCTGTTTCGTTGTGATTCAT 26127 28 100.0 32 ............................ GCAAGCGTCTATATGACAAGGAACGAATAAGA 26187 28 100.0 32 ............................ TCGATGGTTTACTTATAAGCAAATTAAAGCAC 26247 28 100.0 33 ............................ ATGAAAATGATTAAACGACGACCATCTAATAAT 26308 28 100.0 32 ............................ ATAAGCCCCATTCAAAAACGCCTGTTTTTCTT 26368 28 100.0 32 ............................ ATAAGCCCCATTCAAAAACGCCTGTTTTTCTT 26428 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTATTCTGG 26488 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 26548 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAAATCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //