Array 1 681453-689516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTT010000001.1 Campylobacter concisus isolate 2010-112100-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 681453 30 100.0 35 .............................. TCGTGTAGCGGTGAAATAGCAATAGGTGCGCCTGT 681518 30 100.0 34 .............................. CTACTTTTTGCGATAATGAAACTGAAATATCTTT 681582 30 100.0 37 .............................. TTGTTAAAAAATATGTTTTTATTCTAGGCGAGCATAC 681649 30 100.0 34 .............................. TTTATAACTTGTGGATTTGTTGCAGAAATAGCGT 681713 30 100.0 36 .............................. TTATATAAAGAACAGCAGTTGCGTAAGAAAGGATTA 681779 30 100.0 37 .............................. TGGGGTAATAACCCCATACCCCATCTTTTTTATTGAT 681846 30 100.0 36 .............................. TCAAACTTTGGCAGCTCAATAAAATCACAAGGATTT 681912 30 100.0 38 .............................. TTTTCGGCTACTTCTATTCGCTCCCAAATACCTTCAGC 681980 30 100.0 35 .............................. GTTAGAAAAGGTAACGTAGATGGGGATAGAACAAT 682045 30 100.0 36 .............................. AATTTTGTGGAGCATAAAAGATATTTGTATAAATTC 682111 30 100.0 37 .............................. CTGCAAACGTCAAAAAATCAAAAGAAACTATCGAAAA 682178 30 100.0 34 .............................. AATTTGGAGAAACATCGGCTAGTTTTTGTGGAGA 682242 30 100.0 35 .............................. CTACAAATGAAGTTGGTAGATGCTCTTTAAATCAA 682307 30 100.0 37 .............................. CCTGAATCAATAGTATTAACATAACCGGTAGAAAATT 682374 30 100.0 35 .............................. GAAATACCGGAACTTGAAAATAATCTATCGCAAAA 682439 30 100.0 36 .............................. CGCCCAAAACACTTCCCCACTGACGTGGGGCCCCTT 682505 30 100.0 36 .............................. TATATAGCCAAGAGCCTTTACGCCCAAAACACTTCC 682571 30 100.0 36 .............................. TGAGTAAAATATCGATAATAGCCTCGTATGCTCTCT 682637 30 100.0 34 .............................. ATTTGACAAGAACGCCCAATTTGCAGGGGCGGAC 682701 30 100.0 37 .............................. ACCTCCAAACGGGAATAAAGAGAACCAGATTTTAAAA 682768 30 100.0 36 .............................. TCGTGTAACGGTGAAATAGCAATCGGTGCGCCTGTT 682834 30 100.0 39 .............................. GGCGATCCGCAACGCTCTTGTCGTTGATATGGCGATGGG 682903 30 100.0 34 .............................. GATATACAAACACAAGACACAATCCTTGGAACAT 682967 30 100.0 37 .............................. CACAAAAACTTTATGATCCTATCACTGGTTCTCGTCT 683034 30 100.0 36 .............................. AATAATCAACGCCTAAGTCAGAAAAATCAAGCGTTG 683100 30 100.0 34 .............................. AATTTCCATCTATGCCGTCGGCTATTGCTCGAGC 683164 30 100.0 34 .............................. AATTTATCGCATAGCTCAAATTTAAACTCATTAA 683228 30 100.0 38 .............................. AATTGACCTTCAAAAGTATCCGCACTACCTTTTAAACC 683296 30 100.0 34 .............................. AGCGGCAAAGAGCAAACAAAGGTCAGACTATACG 683360 30 100.0 34 .............................. AAAAATCAACTCTTGCTACGTAATAGACGCAATT 683424 30 100.0 37 .............................. CTCTTCTTCAGTGCGTATCTCTTCATCAAATATCTAT 683491 30 100.0 35 .............................. ACTTGATCAAAAATATAATCATCAGCTCTAAAGAA 683556 30 100.0 36 .............................. TTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTGTTT 683622 30 100.0 37 .............................. ATATTTGCGACAATAATTTAGATGTTTCAAGATTAGA 683689 30 100.0 37 .............................. GCTGAAATGAGAAACGATAGCTATGCTGAAAATATCG 683756 30 100.0 34 .............................. AAAAAAGGACTGGGTAATGGATGATCTTATGGAT 683820 30 100.0 35 .............................. TTTTTGGGTTGCCGTTGTGGGATTTGTCGGCGGAG 683885 30 100.0 36 .............................. CGTTTTCAGATGGGCAAAAGGTATATCTAAAAGCCC 683951 30 100.0 36 .............................. CGTTTTCAGATGGGCAAAAGGTATATCTAAAAGCCC 684017 30 100.0 36 .............................. GCAACGACATAAAGCACAAGCAAAGGCACGCTTATA 684083 30 100.0 35 .............................. CATATCTAGTTGGTAATCCTGGAAGTGGTAAAACA 684148 30 100.0 34 .............................. AAGCTTTTCGCGAAAAAAAGAACCGAACTTTTAA 684212 30 100.0 37 .............................. AACGTCAAAAAAGAAGAGTTTAGGAAAAAGGTTGAAA 684279 30 100.0 37 .............................. AATTTTTTCAAATATCCAAGCTTAGAGCCTAACCGAA 684346 30 100.0 37 .............................. CGATCACGGCGATGCAAACTGGGCTGGAGCTAACACA 684413 30 100.0 36 .............................. GCACAAACGGCACTTGTCTATTTAGCTCGCTTATCT 684479 30 100.0 37 .............................. TCTCTACCCGCTACCATATCAGCAATAGCCCAGTCGC 684546 30 100.0 36 .............................. CTCTTGGACGGCGTAGAAGCAGTATCTAAAATAAAA 684612 30 100.0 36 .............................. TTCTTTCATCGTTCGTCATTTTCGTGTCCTAATCTA 684678 30 100.0 35 .............................. CAAAAATTTGGAGCAGTGGTAACAAATAGAAAAAT 684743 30 100.0 36 .............................. TATTGCTGACGTTGAGGCTGTTTTTGTTGCTGTGGT 684809 30 100.0 38 .............................. AAGATGAACTTTGAGAAAGAATATCTTCAAGGATTAGA 684877 30 100.0 37 .............................. AAAATCTATATGCGTCGTAAGTTTTAAAAATTGCGAT 684944 30 100.0 36 .............................. GCAAAGCATTCAAATTGTCTAATCAAAACATCGCAA 685010 30 100.0 36 .............................. TGTAATAGGCTAAATCGCCGTGATTGAGTGGCTTAA 685076 30 100.0 36 .............................. GGCTACTAAGCATAAAAGAAGCTGGCGAGGGCTATT 685142 30 100.0 37 .............................. TGATATAAGGTGGATCAGTAACGACCAAATCAACGCA 685209 30 100.0 35 .............................. ATAGCTTGTAATTTTCTTGGTTTGTATTATTATTA 685274 30 100.0 38 .............................. AACAAGTTTCACCTAGCCTTGCAAAAATTAAAGGCTTG 685342 30 100.0 36 .............................. GCGTTCTATATCTTTTTTTGTTTTCTTGGCGACGGA 685408 30 100.0 36 .............................. CTTCATCTTTGATAATAGGGTTAAAGTCTTTTCTAA 685474 30 100.0 36 .............................. TCTCTACCCGCTACCATATCAGCAATAGCCCAGTCG 685540 30 100.0 36 .............................. TACAGCTCTTTTGGCAGGGCTTTTAGCTCAGGTAAA 685606 30 100.0 38 .............................. GCAATTTTTTCGAGTGTTTCCGTCTTTGGCTTTATGAG 685674 30 100.0 37 .............................. CCAATAAGGACGACTAGACCTAAAACGAGGGCAACAG 685741 30 100.0 34 .............................. ATGGAAAGGATAAGAAAAATGGCTCTTGATTGTG 685805 30 100.0 38 .............................. AAACTATTTACACCAACCATAGTTTTTAGCTCCGTATA 685873 30 100.0 37 .............................. TTGTCCTCTGGCTGTTTTTTGAATCTAGCAATCTCAA 685940 30 100.0 36 .............................. CCACTTCTTGTTGGAGCACCAAGAGCGACAAATTGT 686006 30 100.0 37 .............................. CAAGCATATCTCCAACCTCTTGAAGATCAATAACTTT 686073 30 100.0 38 .............................. ACTCTTGGCTATTTGATGAAAGGATACAAAACGAGCTT 686141 30 100.0 36 .............................. GCTGGTGTGATTGCTTTGCTTTCTCCTATTGGGCGA 686207 30 100.0 35 .............................. CTTTTATTTTCTCTTTAACTATCTTTGGCTTTAGG 686272 30 100.0 37 .............................. GCTGTTTTTCGTCGCAAAGAGCTTTTGTATATTCAGC 686339 30 100.0 34 .............................. TAATCTCTAAAAACTCGCCTACCGTCATACCTGG 686403 30 100.0 35 .............................. TTGTCTTTTGCGTCTTTAAAATTCTCTCTAAAGGT 686468 30 100.0 36 .............................. CTTCATCTTTGATAATAGGGTTAAAGTCTTTTCTAA 686534 30 100.0 34 .............................. ATAGCAGATCCAATAGAAATACACATAGATAAAA 686598 30 100.0 35 .............................. GGTCTGCTGTGGCTGAGTTGTTAGGCACTTCGACG 686663 30 100.0 35 .............................. TAGATGATAATACAGGGCTTATAAGACCTGAATAT 686728 30 100.0 38 .............................. TAAGGGCGTGCAAAATATCAATGCTAAGGTTGTAGCCA 686796 30 100.0 35 .............................. GTAAGCCATAACCATACTTCCACACCCTAGCTCTC 686861 30 100.0 33 .............................. AAATCAGTAATAATATATGGCAAGTCAGCTATA 686924 30 100.0 34 .............................. ACCCTATAATTGATATTTTCCTCGTCAAGTCTTA 686988 30 100.0 36 .............................. ACCTTATTTTTTGAAAGATCAATGCTGTCAACTGGG 687054 30 100.0 35 .............................. GGATAATCAGAAACAACAAAATGATCAAAAATACC 687119 30 100.0 37 .............................. GAAAAAGCAAGAGAGCATAAAAGAGATAAGACAATGA 687186 30 100.0 36 .............................. TTGCCACTCGAGCCGTTATTATTGCCACCGCTAGAA 687252 30 100.0 36 .............................. TTTGGATCTTCAACACGATGCTTGAAAACAATACTA 687318 30 100.0 34 .............................. TCCACTCGTCAAACTCGTTTCTAATAAGGTCAAT 687382 30 100.0 35 .............................. AGGATAATATCTCGCCAGTTCGCATGCCTGTAAAA 687447 30 100.0 35 .............................. TTAATTTGACAAGAATTGCCAATTTTTGGAGTTTG 687512 30 100.0 37 .............................. ATTTTCTAGTGTCTTTATAAGTATCAAATTGAATTTA 687579 30 100.0 34 .............................. CTCAAAGTTTTGTTCCTTTACCAAAATCAAAAGC 687643 30 100.0 36 .............................. ACAACAAGGTCAATACTATTACGTGCACTCCTCGCC 687709 30 100.0 36 .............................. CACCAACTGAGCTGTTTTGTTTTTCCGAACTGCTTA 687775 30 100.0 37 .............................. TAATGTAAATTTTTTTAACATAAGCCTATGAAAACAA 687842 30 100.0 35 .............................. GAAAGCGAGCAGTATCACAGCCTAAAAGAGAGAAA 687907 30 100.0 38 .............................. ACAGCGAAGAATACGCCATAAGCAACTAGAACAGCACC 687975 30 100.0 33 .............................. AATTAATGATGATACTATATTTGATGTAGAACA 688038 30 100.0 39 .............................. TCGTGCAAATAGTTTTCGAGATATAGAAAATCTTTAATT 688107 30 100.0 37 .............................. AGCATTTCTTAAGCAAAATTATGCTATTCGCGTAACA 688174 30 100.0 36 .............................. ATTCGTCTAAAGTTTTAAACAATTCTAACTTTTCTA 688240 30 100.0 34 .............................. TATTATGTTAATAATAGCAAAGCAACTAAAGAGA 688304 30 100.0 38 .............................. AAAGTTCGTCAAACTCGCTTTTTGCTGACTTCGATAAC 688372 30 100.0 38 .............................. GCCCTTTCCAAATTTCAAAAAATGCGTCAAGTATTATG 688440 30 96.7 35 ..........G................... ACACCTGCGAGGCTAGCAAAATATTCTTTGCTTTT 688505 30 100.0 33 .............................. TCGGTCTTTGCTACTTGTTCTTTGCTTAGCCCT 688568 30 100.0 36 .............................. TACAGTGTATCGAAACACACTATACCGCCCTCATAT 688634 30 100.0 35 .............................. TTGTGGCTACTCCCCTCTTTGCCTCTTCAGCCAAA 688699 30 100.0 34 .............................. TTCTGTATTCCTCTCTATCAAAATCCCAAGTATC 688763 30 100.0 36 .............................. AATGTCGCCCTGATTTTTATAATGAGAAAATGGGTG 688829 30 100.0 38 .............................. TATAAATCTGTAAAATAATCATTTACAGATACTTGATA 688897 30 100.0 37 .............................. GTGCAAGTGGTGTTAGTGCGAGCAAGAATACGAAACC 688964 30 100.0 35 .............................. ATAGATCCGTTCCGTCAATGCCGTAAACGTTGATA 689029 30 100.0 35 .............................. ATGATGGAGAGGGTCATTGGCTTGATCCTATTACG 689094 30 100.0 37 .............................. AAAACAACCTTTTGCTCTACTTCATCGGTAAAGCCAG 689161 30 100.0 34 .............................. TTGGTTCTCGATGTTTTAGGGGTATTGCTTTAGA 689225 30 100.0 37 .............................. GCCTTATACATCTCCTCCGCCCAGTCTAGCCATATAT 689292 30 100.0 34 .............................. TTTGCAACCTAGAAGGGCAAGACTGGGAGAATTT 689356 30 100.0 36 .............................. CATATATTGGCTTTAACTCTACAAAGACAATCCCTA 689422 30 96.7 35 .........................A.... TCTCGCCAGCTCTCTGTAAGGTTTCTAACTCTTGG 689487 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 123 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCGCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGTCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CATATGTTTTCAACTTCATTTTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGATAAGCAATACTTTAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //