Array 1 4595922-4601888 **** Predicted by CRISPRDetect 2.4 *** >NC_017271.1 Xanthomonas campestris pv. raphani 756C, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4595922 28 100.0 32 ............................ CCCACCGGCTGGCGGGCGGCGAGGGCGGCTTG 4595982 28 100.0 32 ............................ AGACTGATCACGTGGTTGAGCAGTGCGGCTTT 4596042 28 100.0 32 ............................ TGCGTCGGGATGTTGCTGACGGTGCCGTTAGA 4596102 28 100.0 32 ............................ AGCAGATCGGCGCGCATCTTCTCGATGAATTC 4596162 28 100.0 32 ............................ GTCTGGCAATCGAGAGGATCAGCGGTGAGCCA 4596222 28 100.0 32 ............................ AAGCGCGCGACTGCTTCAGTCAAACCACTCAT 4596282 28 100.0 32 ............................ ACGGTAGCTCGGATGGTCGGCAGCGACGAGGT 4596342 28 100.0 32 ............................ TGAGCGACGTGCAGGGCCTTGAGCGCCGGATC 4596402 28 100.0 32 ............................ GGGGGCTTTGAGCCGGTTTCCCCTGACGTCTG 4596462 28 100.0 32 ............................ AAGCTGTCCAACGGCACCGTCAGCAACATCCC 4596522 28 100.0 32 ............................ TTGCTCGCCCCGATCGCCACGATCTTGGTGTT 4596582 28 100.0 32 ............................ ACATCGGCGGCAGGTGCGGCGGCTACAGCAGC 4596642 28 100.0 32 ............................ ACCACAAAGCCGCTCGTTTCTTATTGCTGTAC 4596702 28 100.0 32 ............................ GGCACCAGATAGGGATCGGTGAAGGCGCCTCC 4596762 28 100.0 32 ............................ TACATCGGCCGGCCAGGCATGATTACCCAGGC 4596822 28 100.0 32 ............................ TTGTTGAAAAAGTAGCCCTCGGTCAGGCGCAC 4596882 28 100.0 32 ............................ TGGCAGAAAAATGATAACTACCTATCGAACAG 4596942 28 100.0 32 ............................ TTCGCCAGAATCGGTATTCAGGTGATGGATTG 4597002 28 100.0 32 ............................ AGAAGACGATTCAGGACGAAGAAGCGTGATTC 4597062 28 100.0 32 ............................ CTCTCATTGGTGCGCGGCATTAGGCGGCCTCG 4597122 28 100.0 32 ............................ GCGACAGGGACGCCGCGTTGTCGTAGAGCCAG 4597182 28 100.0 32 ............................ AACTGCATCGAGCTGCGCGGATAGGGCGTCCA 4597242 28 100.0 32 ............................ GCCTCAGGTGACATGATGCCGGACGGCATGCG 4597302 28 100.0 32 ............................ ATCTCGCGCATCCTGTCGGGCCATTGCGATCC 4597362 28 100.0 32 ............................ ACAACCAGCGGAATCACGCGGCGTTGGTATAT 4597422 28 100.0 32 ............................ TACTGTGACGGTGAGAGCTGCAGAAGGGTCCT 4597482 28 100.0 32 ............................ TCGCTTGCGCGCACGTGGCTGGCTGCGTTCGC 4597542 28 100.0 32 ............................ AAAAAGGAACGGCGCAGGAGTGCATCGAGCTT 4597602 28 100.0 32 ............................ CACTGGATGCCGCTGCCGGAGCCACCGAAATG 4597662 28 100.0 32 ............................ AGGCGGCGAGGCGATCATCTACAGCGACGGCA 4597722 28 100.0 32 ............................ AGCACGGCAACAACCACGCCAGCTACAAAAGA 4597782 28 100.0 32 ............................ AGACAAGGATGCGTGTTCCATCCTTCGGCGCA 4597842 28 100.0 32 ............................ AGTGGGCGTGAGCGTGACGCCACGGCGGCCGG 4597902 28 100.0 32 ............................ TGCCGAGCGGCCGGCGCATCATGAGTGCTGGC 4597962 28 100.0 32 ............................ ACCAGAATGCGCTGGTGCTTGTTGATGATCCA 4598022 28 100.0 32 ............................ AGCTGGTGCCGGCGCAGCTGCTGCCGTTCCTG 4598082 28 100.0 32 ............................ ACAGCAGCCCAACCGGATGGCCTTCCTTCGTG 4598142 28 100.0 32 ............................ TTGTGGGCACGGACGAGGCGAAGCTGATCACC 4598202 28 100.0 32 ............................ AGCAAAAGCACCATTGGATTGAACATAGCGAA 4598262 28 100.0 32 ............................ CGAACGGTCTGGTTTTCCAGTCGAAGGCGCGC 4598322 28 100.0 32 ............................ GAGCGCAAAGCGCGGTGACTTCTTCGAACGAT 4598382 28 100.0 32 ............................ GCGGAAATCGATCGCAGCACAACGCACGCATC 4598442 28 100.0 32 ............................ ACTGATCCCACTTATACTCCTTCGCGCGATCG 4598502 28 100.0 31 ............................ GGAGTCGGGGGAGCGGTGGGGCATGGGTGGG 4598561 28 100.0 32 ............................ AGCGAGACGCGCGAGGTCGAGCGGGAGCTAGC 4598621 28 100.0 32 ............................ ACCGCCGTGCTGGCGGCCAGCTGCACCGTCTC 4598681 28 100.0 32 ............................ GTCATGGACGGTGCGCACATCCACGTGTGGTA 4598741 28 100.0 32 ............................ TGGTCGCGGACTCACCACGACAGCGGTTCCCA 4598801 28 100.0 32 ............................ ACAAGGGCTACCACATGAAGGTGGCCGAGGGT 4598861 28 100.0 32 ............................ TTTCGGCCGATCTTTACCCCCTCTTCCAAGCC 4598921 28 100.0 32 ............................ CAGGGCTGCCGATAACTATCGACCAGAAGAGC 4598981 28 96.4 32 ..............G............. TTGATACGAAATACCTGCTCAAGGAGGAAGAA 4599041 28 100.0 32 ............................ TGACGTGGGAAGAAGACCAACGAAGCCCGGCG 4599101 28 100.0 32 ............................ AGGCCATGAAGGCGCAGATGCTGCTGGCCATC 4599161 28 96.4 32 ...A........................ GCCGACAGCGCCGCGCCCAACCTCACGCAGTG 4599221 28 100.0 32 ............................ GCCAGCAATGCGCGGTCGTCCGAGCTGGCGCA 4599281 28 100.0 32 ............................ AGACGTTGTGCGGCTTCCCTTTCCACTTCAAC 4599341 28 100.0 32 ............................ ACTAGCAGACACGGCGCAGTGATGCCGGTCAC 4599401 28 96.4 32 ................A........... TTGCTTGATGTCATTGAGGTCCGCACTGATGC 4599461 28 100.0 33 ............................ GGGTAGTGATGAGGCCAAACATGATTGCGAGGT 4599522 28 100.0 32 ............................ GCCTCGACGATGCGCGTCTCAGTTGCCGGCAG 4599582 28 100.0 32 ............................ ATGATTTGGTGGGACCAGGGCGTGTGGTACAG 4599642 28 100.0 32 ............................ ATCCGCAAGGCCGGCGAATCCGCCGTCAATCC 4599702 28 100.0 32 ............................ TGGTGCCAAAACGTGCCCAGCAACTATTGGAC 4599762 28 100.0 32 ............................ ACCAGGGGCTGGCGCAGTTTCGGGGGTTCGAT 4599822 28 100.0 32 ............................ AACCCTGGCGGCCCTGGCCAACCGTGGATCGT 4599882 28 100.0 32 ............................ TCGGGCATGACAAGCAAGCCCTCAATTCGTTC 4599942 28 100.0 32 ............................ AGAGATGCACGCCCCGGCATCAAGCACATCGA 4600002 28 100.0 32 ............................ TTCAAGAACCCGAATGGTGTACTGCGCACCTA 4600062 28 100.0 32 ............................ TAGAACGGTTAGGCCAAAGCGGATTAGGGTTC 4600122 28 100.0 32 ............................ AGCGGCACCATCGTCCACGTCACGCGTCCACA 4600182 28 100.0 32 ............................ ACGCCGCATGGCTTGAGTACCGCACGACAGGG 4600242 28 100.0 32 ............................ CTGGGTGTTGTTCGCTTCTTCCACGACAGCAA 4600302 28 100.0 32 ............................ TGGTGAAATTGTGATTGGCGACATACCCCCGG 4600362 28 100.0 32 ............................ CAATCCAGGGTGCGGGTGCCAGTCACCGCCGT 4600422 28 100.0 32 ............................ GCTTAGCGATGCGCGTGCCGGGATGGCAGCAT 4600482 28 100.0 32 ............................ TTGCGGGTTTGTTGGCCTAGGTGAGTTTTTTG 4600542 28 100.0 32 ............................ AGTTCCTGCGCCACGGTATCGGCGTAAGTGCC 4600602 28 100.0 32 ............................ ACAGGTGTTCGTAAAAACCTGTCGCCATGGGG 4600662 28 100.0 32 ............................ GGGCGCATCCCTGGCGGCCCAGGCCACGAAAG 4600722 28 100.0 32 ............................ ACCACCAAACGCGCCTACCGCTGCGCCGGCAC 4600782 28 100.0 32 ............................ GTCTCGGAGACGTCGTAGGCCTTGCCCGAGGT 4600842 28 100.0 32 ............................ AGCACGCCGAGGGCGGCGCCGCGGTCCTCGAC 4600902 28 100.0 32 ............................ GGCGGCCGGTTGCGGTGTCGTACTCAGGGACC 4600962 28 100.0 32 ............................ ACGTCGAAAAAGTCTTGCGGCAGCGTGACTTG 4601022 28 100.0 32 ............................ CAGCCGGGCCACCATTCCAATACGTGCTGGAC 4601082 28 100.0 32 ............................ AGAGGGCGTCGCGTCCAGCGCGGTGCGGATCT 4601142 28 96.4 32 ..........A................. ACGCCGAACTTCGCGATCACCTACGACAACGC 4601202 28 100.0 32 ............................ AGCCCGAACGTGGCCACGCCTGTGCCTGCATC 4601262 28 100.0 32 ............................ ACACGGGCGATATTGTGGGCGCGCACCTGCCG 4601322 28 100.0 32 ............................ ATGTGCGCATCACGGCCGGTGAGCTGGATGTC 4601382 28 100.0 32 ............................ AAAGTCAGACCACGACCAAAAACCGCCCCAGT 4601442 28 96.4 32 .................T.......... TACACCGAGGAGATGGGCGACGAGATCTGCCG 4601502 28 100.0 32 ............................ TTGCAATAGGCAATGCGAAAATAATTGCAAAA 4601562 28 100.0 32 ............................ AATGCCCCGATTCCTGCTAGAGCACCTTGAAT 4601622 28 100.0 32 ............................ TGGAGGCAATCCGGTGAGCAGCACCAACAGCA 4601682 28 100.0 32 ............................ TTTCAGCGCGGCAGGCAAAGGAGCTGGGGTTG 4601742 28 100.0 32 ............................ AAGGGTGACGAAGACAACTACGATCAGAAGCT 4601802 28 96.4 30 ......................G..... TCGTTCCGCACGGGTACCGCATGCATCGCA G [4601828] 4601861 28 82.1 0 ....G.......AC......T..T.... | ========== ====== ====== ====== ============================ ================================= ================== 100 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCTTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCGCGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACACTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGTCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCGAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : AAAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACCACTCACTGCTGTGGAGGCTGTCCAGATAGAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGCGGCGGGCTTATCTGCGGATTCGGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACGCGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTACCGTAGACCGCAGGTGCATCGACCAATCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //