Array 1 38620-38232 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFG01000072.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_55_length_38750_cov_26.1361_ID_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38619 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 38559 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 38499 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 38439 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 38379 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 38319 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 38259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38544-39768 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFG01000004.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_42_length_49533_cov_21.3901_ID_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38544 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38604 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38664 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38724 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38784 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38844 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38905 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38965 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39025 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 39085 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39145 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39205 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39265 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39321 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39381 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39441 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39501 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39561 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39621 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39681 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39741 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49403-48294 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFG01000004.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_42_length_49533_cov_21.3901_ID_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49402 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 49342 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 49282 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 49222 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 49162 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 49102 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 49042 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 48982 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 48922 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 48861 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 48801 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 48741 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 48681 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 48621 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48561 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48501 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48441 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48381 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 48321 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //