Array 1 22113-22446 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797935.1 Aerococcus sp. HMSC062A02 Scaffold404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22113 29 100.0 32 ............................. AATGGCAAACGCTATGATTACACAGTTCCAAA 22174 29 96.6 32 ............................T CGCATAATCCCATTAATTTCTTTGTACGTTTC 22235 29 100.0 32 ............................. GCAAGAAAAGCGATTGAGCGTGTAGGCGAGGA 22296 29 96.6 32 ............................T CAAGGAGAGCCTTGCAGGCGGTTCAGCGCCTA 22357 29 100.0 32 ............................. ACGCCAGGCGGCAATACGCCAGCTGGCAAGAT 22418 29 89.7 0 .................A........T.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 CTTCTTCCCGCACATGCGGGGGTGATCCC # Left flank : GATCCTAAAAAAGATCAGATGATCGAAATAGGTGCTCTAAAGATAGAGGGGGCAGAAGAGAATGTCTTTCATTCTTTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACTTAGATGAAGACGGTAAGGATGAATCGCAAGTGCTTGCAAATCTTCTTGAATTTATTGAAGGTCAAGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAATATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAAACTATTATCAAAAAGGAGAAGATGTTCCTAAAAAATTATCAATTGCAAACAGTTATAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCCAAAGTGAATAAATTTCCAGCTTACTTAAAAAAGAAAGCCCGGTAATATAGGGATCCTTTAGT # Right flank : TGTGATTCGCTATTGGATCAGTCTACTATCACACCTCTTCCCGCTCACGCGGATTTTATTTTATAAATTTTTCATCTACATTTTTGAGAATCGGTGCTAAGTAAATCCTTCTTGATGTATTGCTATTGTGTTCTAAATGAATTACAATATAGACGAAGGGGCTGGTAAATATGTCAAAAAAAGCGAGTATATCAATCAGAATAGATGAAGATTTAAAGAAGAGTACCCAGGACATATTAGATGACTTAGGGCTCGACATGACTACGGCTATCACGATGTACCTAAAAAAAATAAATGCATGTCAAGGGATCCCCTTTTCTGTAAGGAGAACTAGTATACAAGAGGCCTTAGCAGAAGTTGAACTCGGAGAGGTGGAAAGTTTTGATAATGTAGAGGAGTTTAAAGAGTGGATGAAAGAACTTTAAGGATTGAATTATCAAGAAAGTTTGTACGAGCTCTTAAGAAATATAAGAAAAAACATTACAATATAAATAAGTTAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10868-12056 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797907.1 Aerococcus sp. HMSC062A02 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10868 29 100.0 32 ............................. ATCAAAATTGAAAAGGAAGTCGCAAAAGAGCA 10929 29 100.0 32 ............................. GGCCCAACTATTAGCTAATTGTTGTTGTAACA 10990 29 100.0 33 ............................. GATAAAGACAGATTATAAGCCAGAAGCAGGAGA 11052 29 100.0 32 ............................. GGTTTTGACTAGCGGCTTAATGGCTTCCTCAT 11113 29 96.6 32 ............................C TTTAGGGACGTTTGGACAACCAACAAACCTTA 11174 29 96.6 32 ............................C AGGAACGAACCGTGACAGTAGCCGAAATGCAA 11235 29 100.0 32 ............................. TCCTCAATTTCTGTTAAAATTTCAACGCTTGT 11296 29 96.6 32 ............................C AGACTATAGCTCAGTGGGAAGCATACAGGGTG 11357 29 100.0 32 ............................. TAGCTTGTAGCGGCGTTTTAGCGCCTTCTCAT 11418 29 100.0 32 ............................. TAAAGATTTTAGGAGTCACATCGTTATGACCA 11479 29 100.0 32 ............................. GAAGTCCTCATCGATGGTGTGGTTTACGTCAA 11540 29 100.0 32 ............................. CCACCGTGACAAAAGATGGGACATACAATTCC 11601 29 100.0 32 ............................. GAATAATTTTTTAACCCTGGTGGTGCTTTTGG 11662 29 100.0 32 ............................. CAGATGACACCTAGTGAGTCGACCTATGCGGC 11723 29 96.6 32 ............................C TGCTTATCTCTACCACCTTAAAACCTGCGAGC 11784 29 100.0 32 ............................. CTCATCGATATTGCAACCATCCACGACGAGGA 11845 29 96.6 32 ............................C ATCACGGTTGATGTCCCACTCGCCGGTCCCCT 11906 29 96.6 32 ............................C ATACGTTCACGCTGAATCTTCTTCCACTGCAT 11967 29 100.0 32 ............................. GGAACAAAAATTACCTGAATTAAAAGGAACCC 12028 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 CTTCTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATTATCCAACAAATCATTCGCTTTGGCTTGATCGGTGTCCTTGCCACAGTGATCGACTTCGCCCTATTAACGGGCCTTACTGAATGGGGCCATGTCCACTACTTGCTGTCAGCGGGGATTGCCTTTGTTGTCGCTACGATTTTTAATTATCTTGCCAGCATGCGCTATGTTTTTGTGAGTCGTTTTTCTAAGGAAGAGCGGGTCCAGGAATTGCTCTTGTTTGTCAGTCTGTCAGTGGTAGGCCTGATCCTCAACCAGTTCTTTATGTGGGCCTTCGTTGAAAAACTCGGCATCTTTTACCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACTAAGATGGCTTATAGTAACTATGGGGGATTTTTTAAAGTGAACGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGCTTTCTTTAGT # Right flank : TGGACAGTGAAGGCCTAACGATAACGAATACCTCTTCTTTCCGCATACGCGGTACACGCAAACTTAAAGCAAGACAAAAAGAAAAAGCCAGAAAGAATATTTCTTCCTGGCTTATGTTCATTATAGGCTAGATTATTTAAGGTGCCTTGCTTTCTAGATCAGAAATTCGTTGTTCGAGCGATGAGATTTCTTCATGCATACTTGAGATTTCCTCGGTCATTTCATCGATGGTATTAGGGGGAATTTCTTCTTGGCGTGGATTGTTTTCGATAACGAGCCAAGCAATAAAGAAGATGGCAGTCACTGCAAGAATGACATAGATCCAATTGAGTTTGGGTGAGCCGTGGTCTAATTGCTCGAGGGCTTCATCGACGGTCAGGTTCTCCAAACGTTTCCGTTCACGTTCACTGAGATTTTCCAAATCCTTTAAGCGATAATATAATTTTTGGCGTTTCGCTTTTTTAGTCATTTTTGTCCATCCTTTTTACTAGCCTTGATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //