Array 1 45601-44047 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVF01000001.1 Streptococcus agalactiae strain 1B13M NODE_1_length_196479_cov_58.2273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45600 36 100.0 30 .................................... TCAAGAGCTTTTACATGGTCTGCGACCGCA 45534 36 100.0 30 .................................... AAAAGAATAAGTATATGTTCTCATCTCAGA 45468 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 45402 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 45336 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 45270 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 45204 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 45138 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 45072 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 45006 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 44940 36 100.0 30 .................................... ACCCTTGTATGTTAAATCCGCAAGATTTTA 44874 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 44808 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 44742 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 44676 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 44610 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 44544 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 44478 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 44412 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 44346 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 44280 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 44214 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 44148 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 44082 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //