Array 1 564-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDT01000039.1 Streptococcus mitis SK321 contigB2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 563 36 100.0 30 .................................... CTATGTCGGTCAGAAAGAGGTTGCTGTCAC 497 36 100.0 30 .................................... TAGACCTTACACAGAAAAACTCTTAACTTA 431 36 100.0 30 .................................... TGCCTTCTGTAAATCCTTACCAATCAAGAA 365 36 100.0 30 .................................... TCACTTCTTCACAACTCAAAGCATTATTGC 299 36 100.0 30 .................................... ACCTCAGTAACTTTACATTCCTCCGCATCA 233 36 100.0 30 .................................... AACTCGGATAACATTTAAAACAACTGTTAA 167 36 100.0 30 .................................... ATGAGTTCGGTATTGGCGACGCAGGGGAAT 101 36 100.0 30 .................................... TTGATATTGTAACTGGGAACTTTAACCAGC 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CCAACAGCTGACCAAGTTCGTCAACTTCGT # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22571-22935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDT01000029.1 Streptococcus mitis SK321 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22571 36 100.0 30 .................................... TCCTCCACCATCTGTTCCCTCCTTCACTAC 22637 36 100.0 30 .................................... CTGTATATGACAGTTACAGTAGAGTAGGAA 22703 36 100.0 30 .................................... AGCTCCTGTCAAAGTTATTTTAACATTGGT 22769 36 100.0 30 .................................... GGTTTCGTGGTATGGCTACTCATATGTTTA 22835 36 100.0 29 .................................... TGCCTCCTTTCTACAAAACAAAAACCAGC 22900 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAATATGATGAAATTACCATTCTAGAGTTAATCGATTCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAGTATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTACGATTTTCCCCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGGACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACAAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AGGAGAGAATCAACAAGAACAGACCGTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //