Array 1 242032-241147 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATI01000044.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_9712a 9712_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242031 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 241969 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 241908 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 241847 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 241786 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 241725 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 241664 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 241603 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 241542 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 241481 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 241420 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 241359 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 241298 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 241237 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 241176 29 96.6 0 ............T................ | A [241149] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259661-258291 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATI01000044.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_9712a 9712_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259660 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 259599 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 259538 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 259477 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 259416 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 259355 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 259294 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 259233 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 259172 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 259111 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 259050 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 258989 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 258928 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 258867 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 258806 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 258745 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 258684 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 258623 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 258562 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 258501 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 258440 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 258379 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 258318 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //