Array 1 132111-131899 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132110 29 96.6 32 ............................C GCCTGGGCGACAGTCGCCACGCTGACGGGCGG 132049 29 100.0 32 ............................. GGGTGTATCCGGTGTTGTGCCAGTTGATACGG 131988 29 100.0 32 ............................. CATATCCAGGTCCTATTTGGTCACGGCTGTCA 131927 28 82.8 0 ............C.T.-.....G..C... | C [131905] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGCTCCCCGCCTGCGCGGGGATGGTCCT # Left flank : GTAGGCTTGCCTACCAAAACCGTAGGCGGCGCCTGCGAGCGCCTTGCCATACGCGCACCTGACCGGGCGCGTCGGTGGGTGTGGACCGGCTTGCCTACAAAAATGCACGTAGGCGGCGCCGGTCCGCGTCTGGCGTTGCACGTGTCTGGACGGGCGGTTTGCGCATCGCTCAGGCACGTGTCTGGCGGCGTTGCTCGTAGGCTTGCCTACCAAAACCGTAGGCGGCGCCTGCGAGCGCCTTGCCATACGCGCACCTGGCCGGGCGCGTCGGTGGGTGTGGACCGGCTTGCCTACAAAAATGCACGTAGGCGGCGCCGGTCCGCGTCTGGCGTTGCACGTGTCTGGACGGGCGGTTTGCGCATCGCTCAGGCACGTGTCTGGCGGCGTTGCTCGTAGGCTTGCCTACCAAGATCGTAGGCTGACACAACTCCACAGTGGGCTCGAAAGTGATCATGCGGCGAATTCGGCCGGTCCGCCGACGGAGCCGCAGGTCGGCCCTT # Right flank : CCTACGACCTAGTGGCAACCGCTTCCCATCGAGGCTCCCGGGTGGCCTCCGCTCGTCTCGCGAGGCTGTTTGTCGTGGCGCGGCGGCGTGTAGGGTGTCTGATGGTGAGCAGATAAGCGTTTGCCGCGCTTGGCCCCAATCTGTTCGCGCGCACGAATTCCAATACACCTTAGTGCTTGCTGTCTCCACAGTGGGCACCCAAAGAGGAGTGTGTATGACGCGCCGAATGATATTGGGGACCGTAACGGCGTTGGCCACGCTGGCCGCGACCGGATTGGCGGTCGTATCGGCCAACGCCGACACGGTCGACCAGTCGGGCGAACCCATCAACCTCGCGTATTACGCCCGGTGGAACGTCGTCGGAGGCCCCAACGACTTCTACCTCAAGGACGTCCACGAGAGTGGCGCCGCCGAGGACCTCACCCACCTCGCGTACGCGTTCGCGAACGTGACACCCGAGGGCGGTTGTTCGCCTCAGTTGGACTGGGGCGACTACACCT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTGCGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205843-205510 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 205842 30 100.0 31 .............................. CTCCAATGTCGAGGGCGAATCCAGGGTGTTC 205781 30 93.3 31 ............................CA GCAGTCCCCCACCGAACAATGCGATGCAGAT 205720 30 100.0 31 .............................. CAACCCTGTCCGGCATGGCCGGTACACGACC 205659 30 93.3 31 ............................CT GCACGACCTGCGTGGTGGTGACACGTCTGCC 205598 30 90.0 29 ..G.........................GT CCGACTCGGCGGTCGATCGGGAGTAAATC 205539 30 86.7 0 ...........AT...............AT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.9 31 GCACTCCCCGCGCACGCGGGGATGGACCTC # Left flank : CTCGTCGATCATTCGATGGACCTGCTTGAGGTTGAATCCGAGCTCCTTCAACGCGACGATGCGGTTGAGGCGGGACAGTTGTCGAGCCTCGTAGAACCGGTAGCCGGTCGCCGGGTCCACCCGTGCCGGCTGCAGCAGACCGAGCGCGTCGTAGTGCCGGAGCATCCGTACCGACACCCGGCCCAACCTGGCGAAATCCCCAATGGCGAACATGATGATCACTATGCAACCGGCTGACACCGTGTCAGAGTCAAACCCCTGTGGTCGGGCTCACCTCCACCGGCCGGTCGCGGTGGCGAATGTTTCGACACCGAATCGGGCATACGGGTGGATGAGCGGTCAGACGGATACCATGGCATCCGGTCGCTGACATGACGAACGGATCGTTCGGGCGGCCACGTCGCGCCGCCCGAACGGTGTCGTGGAGCTACATAGTGGACGAGTAAATGATCATGCTCCGGATTCGGCCCCATCGTCGATAGAACCCCAGGTCAGCTCTT # Right flank : GGTGCGCGCTGATCGCCTGTGGGCTGGCTGCGTGCTCCGCGCACGCGGGGATGTCCGGTCGGGTTGCCTGCTTGCTCCCGCCCTGCGCGCCTCGAAAATCGCTGGCCCGGTTCTTCGCCGACTGCGAGACTGGCGGGCCGGAATGAGCTGGGGCCCAATGTAACCACCGGCGGGACATCCCGCCGGGATCGGCATGCGGGTCTCCAGCGGATTGAAGAGGAGCCGATGACCGATTCGTGGCGGGTGTGGCGACGATCCGTCACAGCGGCGCCGATTCTGAGCGGAGCCGTCGGCCTGTTGGCGATTCTCAACACCGGCTGCTTCATCCTGGTGGCGATCATTGTGTCGCGCATCGTGGCGCTCGCGGCCGACTCCGTCGGTCGAGACATGACCTGGCCGATGGTGTGGTTGTTCGCCTCGTTGGTCGGTACCGCGGTGACGGGTGTCCTCATGGGACCACTGTGGCTTCGGGTGGAACGACGAATCCTGCTCAGCCAGAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACTCCCCGCGCACGCGGGGATGGACCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 928489-927329 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 928488 30 100.0 36 .............................. CGGTCACCGGCGGCTTGGTCGATGATCCATCCCGAG 928422 30 100.0 36 .............................. GGGCCGACGGGCATTCGCGCGATGTCGGTCATGCCG 928356 30 100.0 36 .............................. CGGGGATCTATACGGCGGCGCTGGGCGGCGCGATCA 928290 30 100.0 36 .............................. AGGAGCGGGATGAGGCGCTACGGCGTCACGACCGGG 928224 30 100.0 36 .............................. GGTTCCTCCTCGCCCCGGCGTGTGGCCAGGTCACAA 928158 30 96.7 36 .................T............ ATCTCGACCGTCACGTCGACGGACTCGACATGAAAC 928092 30 100.0 37 .............................. TTGACGGCCAACCCCGATGGATCGACGAGCTCCTACC 928025 30 100.0 37 .............................. AGATCGTCACCGGCTTCGGCGGCGACGTTCCCGGCGA 927958 30 100.0 37 .............................. CGGTAGGGGTCGGTCTGCCCGATGTGCCAGAGGTGGG 927891 30 100.0 37 .............................. AGATCGTCACCGGCTTCGGCGGCGACGTTCCCGGCGA 927824 30 100.0 37 .............................. CGGTAGGGGTCGGTCTGCCCGATGTGCCAGAGGTGGG 927757 30 100.0 37 .............................. GAGTTTCCATATTGCACCATCCTTGTACGGCTCATGC 927690 30 100.0 37 .............................. AGGCACACGAATGAGGCGGACGAGGTGATCTCGCCGC 927623 30 100.0 36 .............................. CGGGGTTGTAGTTGACTCGCGCGAGAGGGTGGTTGA 927557 30 100.0 37 .............................. ACGTGAAGCACGCGTCGGGACGGGTTATCTCCCCGGA 927490 30 100.0 37 .............................. TTGATGCGCTCATTCGTGTTGCCGCCACGCAGGTCAT 927423 30 100.0 36 .............................. TAGGTGTCGCGGAGGTTCGCCACCACGGCCGGGACC 927357 29 80.0 0 .....................-...AATGT | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.7 37 GTTCCTCATAGCCCTACGAGGGTTCGGAAC # Left flank : GGCTCGCCTGTCCGATGAAGGCCCTCAGTTGTCCGACAGCAAACTGGCTGATGACCGTCCGATCTTGGAGATCGGTCGCAGTGAGTACGTTGGCGTGCTGTCGGCGATCAAGAACGACCGGCTTTGCTAGCAACGGACCCGGCATTGCGCACATGCCGGGCCCGGTGATTGAGCTGCATACCGACATCAGAATATCGATTGAACGCGATCAGCGCTGGTGACCTCGCCCGACGTGGCGGGTCACCAGCGTTTCGTTTGGCTTCAGTCACTCGACCGAAGAATCTTCGGCCGCAGCGAGGCGCGGTGGAGGTGTCACCGTGTTGGTCGACGGAACTACCCTTGTGAGGTTGGGCAATGCAGGTACGGTCGGATCACGATGAAAGGGGTTGGTGTGGGAGTGCAGCGCGACACGCGGTCGAGATGCACGACCGGAGGTTCGCTGCAAAACGGGTTGAGAACAGCCCTCGAAACCTCGTCACGACCTGCACCGTTACCCTCGG # Right flank : CCGGGTGGGCGGCACGTGGCGGGTATTACCAGTTATTACAGCCAGCGGTTTTGGGGTTACAACTGGTTGTTTAGGGGTGCTCAGGGTTGATGGTGTGCGCGGCGTGTGAATGGCAGGAGCGTATATAGGCCGAAACGGTCGGACGGGAAGTGGCCTGGAACGCGCGATCAGTTTGTCGTGTGACGCGACGTCGTGGAGTTCCGATACTGGGGCGGCGGGGTTGGGTGTGCCCGTCTCCGTGTGGCCGCTCGGTTCGGGTTCGGTGTTGTCGGGGTGTCTGGTTGAGGCGTTCTCCCAGGCTGGCGACCTTGTAGTTTCCACGATCGTTGCCGAGGCGGATGCCTTCGTGAATGCTGACCACAGGGTCCTGGTCTTGTGTCCGGCTCGGCAGGTCCCCATTGTCGAACAGGTATGGGCAAGGGCGTCAGCTTCGGTTCGGTCGCTGCTGCGGGTCGAGGCGGTGACTGCGCAGAACCTGGGTACCCGGTTGGTGTCGCTGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATAGCCCTACGAGGGTTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 975925-973883 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 975924 29 100.0 32 ............................. ACATGTGGTCTCCTGTGGAGTAAGAGGTGGGC 975863 29 100.0 32 ............................. TCTTTCGGCATCACATTGGACGTGAAAATGCA 975802 29 100.0 32 ............................. AACTGCACGACTACGACTGGGAATGGCCGCGC 975741 29 100.0 32 ............................. ACGATCCCGGTCCAGACTGCGGCGATGGTCGA 975680 29 100.0 32 ............................. CACGCGTCGTTGGTCCAGTGGTTACGGACATC 975619 29 100.0 32 ............................. CCCACCGTGAGGCCCAGGCCGGCACCCCACGC 975558 29 100.0 32 ............................. CTGGCTGTACCGCTGCGCCAACTCATGACGGT 975497 29 100.0 32 ............................. GCCGGCACTTCTGCGCCGAGTATCGTCGGCGG 975436 29 100.0 32 ............................. TGGCACCCCGAGTGGTGGCCCGGCACGGCCGG 975375 29 100.0 32 ............................. CAGGGTGTCCTCCGATATGCCGGCGGAGCGTG 975314 29 100.0 32 ............................. CCGTGTTGCGTGCGAAGCTCGCCCACGTCATC 975253 29 100.0 32 ............................. GCGGCACCACCCGGGTGGCGATCACGAGGACA 975192 29 100.0 32 ............................. AGGAGATAGTCGCCGCCCAGGAACGCCACCCC 975131 29 100.0 32 ............................. CGCCGTAACGCGGTCAACTGGTACCGCAAGCA 975070 29 100.0 32 ............................. TTGCTCGGTGATCGTGATCCAGTCGCCCACAT 975009 29 100.0 32 ............................. CGTGGGTGACTGGATTGTTGGGGGCGTAGGTA 974948 29 96.6 32 ............................A TAACTCCCACTCGCGCAGTTGCCGGTCGATCG 974887 29 100.0 32 ............................. ATATGAGTCCTTTCTTCTGACGAGACCACCAG 974826 29 100.0 32 ............................. TCGGCGAACCGTTGGATCAGGTCGCCGAGACC 974765 29 100.0 32 ............................. AAGTTGGGACCGCAGATGGTCGCGGCGTCGTC 974704 29 100.0 32 ............................. GAGACGTCTTAGAGGGCCACTGAATCGGCCAT 974643 29 100.0 32 ............................. GCGACCACCGTCTGTGGGAGAGCCTGGTCGAC 974582 29 100.0 32 ............................. CATGCGGAGCTGCGGTGGAAGCTTCACCGCAG 974521 29 100.0 32 ............................. CTGGGTTGTTTCCCATTTCGGTGAGGTTCGTG 974460 29 100.0 32 ............................. ACGCCAACGCCGAAGCCGGCACCCGCGACAAC 974399 29 100.0 32 ............................. CCGGTACGGGATGTATGGCCGGGACAACCCGA 974338 29 100.0 32 ............................. GGTCGGTCATATCGAGATAGTCACGCCACGCC 974277 29 100.0 32 ............................. TTCACCCTCCTGCGGGGCAACACCATCGCCCT 974216 29 100.0 32 ............................. CCCACCGCACACCACCACCCCCTCAGGGCATC 974155 29 100.0 32 ............................. CGTTCCTTGAGCACCTCGGAGTCGGAGTACCC 974094 29 100.0 32 ............................. CCCACGTCGCCGGACTCCAGAAGCGACGCGGA 974033 29 100.0 32 ............................. TACCTCGATGACCTTGACCTGCCGTACGACGA 973972 29 100.0 32 ............................. TGGCGCGCGGATAAACGGCGCAACACCGTTCA 973911 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.8 32 CTGCTCTCCACGCACGTGGAGGTGTTCCG # Left flank : GATTTACCGACTGCTGCCTCAAATCGTCCACGACCTTCAATGGTTGCTCGCACCTAGCGAAGTCCAGAAAGAAGAGCTCGTCAACCCTGAGCTAGTGCACCTCTGGGACCCTGATGTCGGAGAAGTATCAGCCGGAGTCAACCACGGCGACATAGACCCGGACTGGTGAACCAATGCCCAAACTCGTTGTCATCAACACCACCGCTGTGCCTGATCACGTCCGCGGTGCCCTCACTCGTTGGATGATCGAACCGACCCCAGGAATGTACGTAGGGACCTTGTCAGCCCGCGTCCGAGACGAACTGTGGCAAGCCGTAGCCGGGTCAGTCGGCGACGGGGCGGCCACCATCGTCTACCCTCACGCCGACTTCGAACAGCGGTTCATCATCCACACCGCTGGCTATCGACGTCGAGAAGTCATCGACTGTGACGGACTCCAGCTGATCGCATTTCGAGCCGAAAACGGTAAAACGCTCGAATAAAATCCCAGTTCGCGAAGC # Right flank : TGAGAAAGCTGGCCGGAGTGGAGGGCCTCGACACAGTTGCGGTGGTGGCGGACTGAGCCTTCGAACGGTTCGATGGGGCGTGGCGGGATCGGTGTCGATGCCCAGTCCCATGCTTCGGTCGTAGCGCGACTCCGGTGAAATCACTATCGGCGAGGGGGCTTCTCGGGGTACTCGCGGTGGGTTTGGTAGCAGGCGTCGGCCAGGGCGATCAGAAGGTCGGCGACATCGATGTCCACGCCGTTGACCTTGGGGTTGAGATCGGTCTCGAGCCGTGGGCTCAGGGGGTCGTGGATGGTGAAGAGGAAGGGCGGGCTGTCCCATGTGGTGTGGTCAGCGAGGGTGATCGCCGGAACCCGTATCAGGGCGTGGTGGTCGATCTTGGGTGACATGACTTATGCGTCCTTTCTGGAAATGGATGCTTCTATTGCTGGCGCGGGTAGGCGTGACCGGTGATGCGGTGGCTGAGTTCGATGTCGTGGGGTAGGTCTTCGCGGGCGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCACGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 985169-986785 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 985169 29 100.0 32 ............................. CCGCTGTGAAACCCCGCAACGAATGGGAACAA 985230 29 100.0 32 ............................. ATTTTGTCGATGAAGTACCCGTTCCAGACGTC 985291 29 100.0 32 ............................. TCGTCGGCGACTTTGGCGATGCTTCGTTCACC 985352 29 100.0 32 ............................. CCTTGATCCGGTCCCGCGCTTCACCATTGGGA 985413 29 100.0 32 ............................. TGCCAAATGGTGGCACCCAGGCCCACGTCAGC 985474 29 100.0 32 ............................. GTGCGGATCGGGGGCGTGTCCGTCGACGGGGC 985535 29 100.0 32 ............................. GTCTGTGACACCGTCCCAGACCATCGGTGGGA 985596 29 100.0 32 ............................. TTGCTCGCCGAGCGGGCCGATCGATCGCTGAA 985657 29 100.0 32 ............................. CAACAGGCCCAGGCTGACCAGGACCACCGGGC 985718 29 100.0 32 ............................. AACACAACCAAGGGAGTCGCCACTATGGCCAC 985779 29 100.0 32 ............................. GAATCACCGAATGCACCTCCCAGGTGTAATAC 985840 29 100.0 32 ............................. TCATCGAGCAGCTGGCGACCCTACCGCCGGGC 985901 29 100.0 32 ............................. GGAGTTGGATAGCGGACTGACTGAGGCCTGCG 985962 29 100.0 32 ............................. CGCCAGCCTCGGCCAGCAGCTCCAGGAGTACG 986023 29 100.0 32 ............................. GCGTCGTCCGGCCACTCGTCCTCCTCAATCCG 986084 29 100.0 32 ............................. CAGTACGAGCAGTTGCGCGCCAAGGCGAAAGC 986145 29 100.0 32 ............................. TTCCTCCTGGGCAAACTGGGCGAAAACGCGAA 986206 29 100.0 32 ............................. ACCGTGCGGACCATCTCCACGTTCCCCGCGTC 986267 29 100.0 32 ............................. TGCGCCAACGACGCGTTAAACCGGCACGATCC 986328 29 100.0 32 ............................. GTCGAGCCGTGGTGGGCGGCTCCGCTACCCGA 986389 29 100.0 32 ............................. GCGCGCGGCCTCGGTGGCGGCGTCGTCGTGAT 986450 29 100.0 32 ............................. AAAAGGGGGGCCGGTCCGCCAGGGGTGCGGAC 986511 29 96.6 32 ...........................T. CCGGCGATCTCGACATCCGCAGCATCACCGGG 986572 29 96.6 32 ............T................ GTGAGTAGTGAGCACCTCGTGCGAGATGTGCG 986633 29 96.6 32 .........G................... GCCGGGACGGCAAAACCGCGTCACCGTCGACG 986694 29 96.6 32 ....................A........ ACCGGAGATGCTGCACCGATTCCGGGGCCGGT 986755 29 86.2 0 ......................A..GTT. | TC [986775] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 CTGCTCTCCACGCACGTGGAGGTGTTCCG # Left flank : ACACCGTCGACACCCTCCAATACGATTGACCTACCCGATAGATACCACGTATGTGTTCGAGGTTCATTTGAGGGCATTGAGTTCCCTGGATTGGGGGAGCGGTGACGATCAGCTTCTCTTTCGCGAAAAGCGACCATCATGGAGCATCGGGGAAGCTGTGCTCAGGATTCCACTTGATAGTGTGACGCTGATCAACGAACGTATGCGACAAACCCGTGGAGGGGTCCGACAATCGCACCATGTACACCCGCAATTGCGTTGGAGATGTCCTGCCCCACCTTCGCCTGATCAAAATGCACGAGGCAACTGTCATCACGGTCCCCTCCTCCCCGGAAGATCTCCCCACGACATGGACTCCTGCGGGTGACTGTCACGCAAGTCCCGAGAACCACAGACCCGATGCTCGACGCCGAGAGCTAACCCCCTGTGACGGACTCCAACTTGTCGCGTTCCAGGCCGAAAACGGTAAAACGCTCGAATAAAATCCCAGTTCGCGAAGC # Right flank : GGATCAGCCGGCTCCGCTCCGGCCAATACGAACCTGGTGGACCACAATCGACTGCTGTATATCCCCGTGAGCTTCCATGTCGACCGGAGATGATCAGCATGACCATCGCCACAGTAAAACAGACGGCACTCATCTGCAACAGATCAAGCATTGTGGATAGTCGGTGCACCCAGGATGGGTGCAGGTCGACCAATCACAACCAACCCGGGACGACACCATCCGTCATTCAGTCGCGGGATCGCTGCATGTCGTTGACACTATCCGACACTAGCTAACACCACTTAGCACTGTCTTCAAGGGACTCATAACCCGTCGGTCGCCGGTTCGAGCCCGGCCCGCCCCACCACGGTTGACCTGGGGTTTCACCTATTACAGGTTCGGGATTGTTGTCGGTTTTGTCCTCAGGTGTTCGCATGGTGTACGCATGCGCGTGCATATAGTTTTGTTTAATGTTTCCTCTGGGCACTATGGACGCTGTTTTGTTGGCGGCGGCGCGTGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCACGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1304834-1304436 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1304833 29 100.0 33 ............................. CCGTGACCTCCCAGTGGGAATCAAGTGGCAACG 1304771 29 100.0 32 ............................. AACCTCACCACCACGCTGGTTCGGCCATGGCA 1304710 29 96.6 33 ............................A CCCTCATGACACGGTGGCGACTCGACTCGGTGC 1304648 29 96.6 32 ............................G ATCTGCTGGTACTCACCTTTGAGGGTCTTGGT 1304587 29 100.0 32 ............................. AAGACGATGCTTGGCCCTGTCCAAAAACAATG 1304526 29 89.7 32 ...C..........T.............C CCAGGGGTCACCGATGGGGGTTACCTGGGCGA 1304465 29 82.8 0 ...C..........G.T.......T...G | C [1304440] ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.1 32 GTGTTCCCCGCGCGAGCGGGGATGGTCCT # Left flank : TCGCCCGGATCAGCGCCGAGGAGCAGCGGCGCCTGAACGAGTCCGCCGACCTGCTGTCGGACGCGATCGCGGCGGCGGCCGCCGGCCACGGATTCGACTATGTGGACGCCCGGGCTCTCTTCACCGGTCACGCGGTGTGCGATGACGTGGAGTGGATCAACGGCCTGTCCAATCCGATCGGGGAGTCCTATCACCCCAACCGGAACGGGCACGACGCCTACACCGGCGAGGTGACAAAACTCCTATAGGGACTCTCCCGGTGAAGACCGGACGAGACCGACCGCCGCCGGTCAACGGCGACCGGCGGCGGTCGCCGTCCGGGGTCGAGTCCCGGTGGGGCGACGGTCGAACCACCCGGGCGCGGCGGCGGTAAGGTGACCTCGGATGGTGCCTCGGCGGTCTCGAAACGTCGTCGGATGCGGGAAAGTTCCATAGTGGAGGAAATAGTGATCATGCGTCGGATTCGCCGTCCTCGTCGATGAACCCGCAGGTCGGCTCTT # Right flank : CCACGCAGTGGGGCCGCCAGGTCTGCCAGGTCGGGGAGGTCGGCCGGGCGGATCGTCACGTTCTGGCCGACGTAGTGGAACGCCGCGCCGACCGAGGTCGTGGGTATGCCACGCAGCGCCGCCCACGCCTGTCGGTAGGCCGCCAATTGCACCGCCGCAGCCTTGGCCGCCGCGCCGTGCGGCAGCCGTCCGGTCTTCCAGTCGACGACTTCGAACCCGCCGTCGCCGGTGTCGAACACCGCGTCCATGCGGCCCCGAACCACGACTCCCTCCAGGACGGTGCTGAATGGAACCTCCAGCGCGATCGGTTGGCGCGACGCCCATTCGGAGGCCATGAACGCCTCTCGTAGTTTCGTCAGCTCGGTGTCGGGGTCGACCTCGGGGTCGGCGGCGCCGGGCAGCTCGGTGAGGTCCAGCAGTGTGGTCGCTCCGAAGTGCTGTTCCACCCACGCGTGGAATGCGGTGCCGCGTCGGGTATGCGGTGCCGGTGCCGTCGGTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1509755-1510025 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1509755 28 96.4 33 .........A.................. CCGCTGGTCAACCCTGTCACAGGCAACCGTGGT 1509816 28 96.4 33 .........A.................. GCGATCCAACGGTCACCCGGATCGGGTGACCGT 1509877 28 100.0 33 ............................ TGTTGCGAGGTTCCGGCCGGCCTGTATGGCGCA 1509938 28 100.0 33 ............................ AAGCATTGGAGATCAGTGCGGAGTATTCGATCT 1509999 27 89.3 0 .....-........T........T.... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTAGTCCCCGCACGCGCGGGGATGGTCC # Left flank : TAGTGAACGGGAATCGTGAACCCAGTGACCGTCCCCCGCCACCGCCGCGGCCTGGTTCGCCAGAGTCGCCAGGCGGGCCATGCTTTGTCCGCCCGGCCGAATGATCAGGCTCCACCCCCACCGATTTCGGCCACCGGTCGGCGGCACCTCACGGGTGATGCGTCCGGCCAGCAGGGCTCGGCGTCCGTCCTCATAGAATTCGCGTTGACGAGACAATGGCGGATTCCCATTCAGCGTGATGTGGTCTCCCCGACCGGTCGTTCCCCTGCGCCGGAGGCTATCGCAGGATGTCAAATCCGGTTGTTCGATCCCCGGTCGCCGGACGGCGCGTTGTGTTTCGCCGGACGATTGCGGGGCGGGCCGCATCGTGGCCGTATGGCTGTGGCAGCGAACTAGTATCGGTGCATCACGCTCGGACGGCCTGTAATTCCATAGTGGGTTGAAAAATGATCATGCTCCGGATTCGGTACCCCCGCCGACGGCACCCCAGGTCAGCTCTT # Right flank : CCCAACACAGGGGAAAGCGCACCCTTAAAGCGTGGTAGCCCCGCACCCGACGCGGACCAACGCTCCACCAACCGAACCCGGCCGGGCGACGTCCCGAACCGACGTCGCCCGGTCGATGCTCAGCAGACCGCCGGATCCTTCGCGCAGGCGTCGTCGGCGATACGCGTCACCAGAGCCGCTTCGGTGTCCGGGAAGTACTGGTTCGTCACCCAGTCGACGAGCTCAGGCATGGTGAACTGGTAGGCCGCCATCTCATCGGCACTGCTGCCCGGGTAGGCCTCTGGCCGACGCTCGTACTCGTCACGTCCGGGGTCGGGAGACACGTTGATGATCGCTCGTATCCACCAGTTCTCGTGCCTGGCGAACGCATAGATGTTGTAGTTGGTGCCACCGTCGCCCGCGAGGAGATAACTCTCGTCCCAGTCGCCGGCGAGTTCACCCTCCTGGGCATCCTGCATCTCGGAACCACTGCCGTGCAGTTGGTCGATCATGCTCTGATA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCACGCGCGGGGATGGTCC # Alternate repeat : GTAGTCCCCACACGCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 2814196-2813862 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2814195 29 100.0 32 ............................. GCCGATGGCATCACCGTGTTCGGCCGGGTCGT 2814134 29 100.0 32 ............................. ACAAGGTTCCGGTCCCCGGCCCTCACGGACTG 2814073 29 100.0 32 ............................. CCGTCCATGGACTTGCCTACATGCAGGTCGAT 2814012 29 93.1 32 .........G..................A ACACCGCTGTCCAGGCCCTCATCCAGGGCCCA 2813951 29 89.7 32 .........G.G................T GCGTCGAACTCATCGATGCTGAAGTAGAAGCT 2813890 29 82.8 0 .........G.G..T......G......G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGCTCCCCCCACACGCGGGGATGGTCCC # Left flank : GGTGTCGAGCCCGAGTTCCCGCAACGCAGCGGTGATCCGATCGGCGAGGATCACGTCCTGAGTGGTGACCGCCGCGTCGGTTCGGGTCTGCAACCGGATCATGAGTCGGTCGGGCAGGATCTCCATGGAGAGGTGCTCGTCGGCGTCCATGCCGGTCGCCTCGGCGGCCTGCGCACCGGCGCGGGCGGCTTCGCTCAACGACCCGACCGGTACATAGCTGAGCAGCATGCCGAGCACGTAACGCCAACCCAGGTCGAAGACCCAGTCGGAAGCCTCCTGTCGGGTCAACACGCGTGGTTCCGGTCCAAGCTCAGCCATGCCGTCGAGCATAGGCCGATATCCTTGACAGTGGACGTTGAGTGCACCGAGTGTCGGCGGGGAATGGGGTGTCGACGCGCCGACAGGGTCCGGTTCGGCGACCATTGAAGTCCATAGTGGAAGACAAAATGATCATGCGTCGGATTCGGTCGATTCGAGGGCGAACCCGCAGGTCGGCCCTT # Right flank : TTGTCCGGGTTAGAGACGATCCGAAGCAACGGTTTCCTAAACCGTACGTCCGCTCAGAACTTGGCCAAGGCGTCGTTGGCAACGTCGATCATGACGTTGATCATCACTTCCGGTGTCAGTGTGTCGATCTCGGTGGCTCGAAGGACGTACTGGGCCGACAGCGACATGTTGCCGCCGAGCGCTATGACGTTGGTGAACGAGGTGTTGTTCTCTACCTGTTGGTATGAATACGCCTCGGCTCCCAGCCCCTCCACCGGTTGGCCGGTGGCGCCCTTCTCCTCCTGGTAATCCGTTTCGTAGTCGAAGAAGGTGCGTGCGGTGTCCTCGGAGTCGTTGACCGTGATCCACAGCGAGAAACTCCCGGTGATCTCTCCGGCGTATCGATCGCCGCCGGTCAGTTGAAGGCGACAGGTGAGTCCTCCGGTCTGGTCACCGTAGGGCGTGGCGCTGGACTCGGTGACCGACTCGATCACCACCATTGATTCGACCGGCTCCAACAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCCCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 3087248-3087521 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3087248 30 96.7 31 ............................A. CAGGGGCGGAATGTGTCTGTCGTATGGCGGT 3087309 30 96.7 31 ............................G. TGGCGACGGTGGCGCTGGCGGCGATGATGGT 3087370 30 100.0 31 .............................. GGGTAACTGTCCATCTCTGTCTCTGACAGGT 3087431 30 93.3 31 ..........C...C............... CCATGTGGATACCCTTTTCTCTGTTGGTTGT 3087492 30 80.0 0 ..............C..........GGTCG | ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTGCTCCCCGTGCATGCGGGGATGGACCTC # Left flank : CTCCGATGCCCGAGTCCTTCCAGGCGGCGATCCGCTGCTCGGTGTCGTCGAGAAGTCGGGACAGGATCGCTTCGTGAAAGAGGCCCTCGGCCTCGTAAAGATGCCGTTGGAGGATCTCGATGCCGACTGCGGGATCATCCCGTTCGACGATCGCGTCGGCGACCTCTCGTTGCCTGATGCCGCGCCGCCCCAGAAGCGCGACCAAAGCGCTCCGTTCCGGGGACTCTGCCTTCATGACCGCATCCTAGGCAGCCTGGTGGTGGGCGGAGCCGTCGCAGGGCGAGGATCATCGGTCGAGGGCATCGTCCGCATGGGTAGGGATTGAGTGGTGTCGCTGGAATAGCCTGGGCCTCGGGTCCGAGGTTGGGGCGCAGCTGTCGAACCGGCCGGCCCGATCTCGTCGACCGCGCACGACGAACGGCATTAAATCCATAGTGGTGCTTGAAGTGATCATGCTTCGGATTCGGCAGTGATCGTGATGGATCCGCAGGTCGGCTCTT # Right flank : GGCTACGGCCCAACGAGAGGCTTATGCCAACCACGCCCCGCCCCTCACCGGGGGGCCGAACCACCGCGCCCGGTCACCGGTCCGAGTAGGACCTGGCCAAGGGGGTGAAGGGGGTGGGCTGGCCGCCGGCAGGTTGTTGGACTGACGTCCACAGGCAGGGGAACGACCCGGTGCTGGAGCATTCCGGTTGCCACCACAGGGCGACCTCGGCACCGCCTTGTTCCATCCCGATCAGGGCGGCCTCGATCATCTCGGGGGTGCTCGCACTACTGTCCGGCCGAAGCTCCACATAGAACTCCGACCACCAGATCGGCAGGTCGGTGCGTTCGGCCACCCATTCGGTGATGGCCTGGAACTTGTCGGTGACCTGGTCGGTCGTGGTGGGGTACCAGCTGCCGTCGGAGGTCTGGGCGGCGCCGTCGAGGGTGAAGAAGTCGGCCCCGACGTTGTTGTCCAGCCAGTACTCGACGGCGTCGAGCACCCGGTGGTCGACCACTCCC # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTGCATGCGGGGATGGACCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 3253490-3254372 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3253490 29 96.6 32 ............................G TCCCCCACCGTCCACACCGAACACAACCACTT 3253551 29 96.6 32 ............................C CGCACCGATCTGGGTTGAGTCCGCCGTGTTCC 3253612 29 100.0 32 ............................. AAACGTCGGCGCGAACGTTTTACACACGATCG 3253673 29 96.6 32 ............................T CGGGACCCTGACCGTCTGGGCATTACAGACGT 3253734 29 96.6 32 ............................C CGCACCGATCTGGGTTGAGTCCGCCGTGTTCC 3253795 29 100.0 32 ............................. AAACGTCGGCGCGAACGTTTTACACACGATCG 3253856 29 96.6 32 ............................T CGGGACCCTGACCGTCTGGGCATTACAGACGT 3253917 29 100.0 32 ............................. TGTTGCCGGATTACCTGGTCGTGGGCGGGATC 3253978 29 100.0 32 ............................. TGTTGCCGGATTACCTGGTCGTGGGCGGGATC 3254039 29 96.6 32 ............................C ATCCCTGTCCCTGTGAGGCAACCGGCGATGTT 3254100 29 96.6 32 ............................C AACACGGCCGGTGGGTGCACCCGAGGGCGAAG 3254161 29 96.6 32 ............................G AAGCGGCGCGCGAGGTCACCCCACTCACCGGC 3254222 29 96.6 32 ............................T CGAATGATCGCGACGAGAGCGGCGATCGCGAC 3254283 29 96.6 32 ............................G GGCAGTACCGATCCACATCGAACCGTCCACCA 3254344 29 89.7 0 ...........C.............C..T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.0 32 GTGCTCCCCGCACGCGCGGGGATGGTCCA # Left flank : GGGATGACATCGGTCGTTAGGGTGCGAATCAGACGACGACTAAGGGGAACTCGTGAACGACAAGACCTATGACCTCAACGGCGACGGTGTGCCCGACGAGGTGACCAAGATCGGCGACACCCTCTACATCGACTACAACCGCGACGGAAAGTTCGACGCGATGGTGACGCCGGAGGGCGAGATCTACGCCGACCTCGACGGTGACAGCACCTTCCGCACTCGGATGGTCGACTCCGACGGTGACGGAGTCATCGACACCCTGGAGACCGATCTGGACGGTGACGGGGTGCCCGACCTCATTGAGAAGGACACCACCGGCGACGGCATCCTCGACACGGTGATCCGTACCGACGGCAAGGACTGAGGCGGTTCGGCGTGGGGCGGTGGGCCTGTCGCCGAGTGCGCTGGGCGGTCTCATCGCCAAGGATTCCATAGTGGATGCGTAAGTGATCATGCTCCGGATTCGGCCCACTCGGCGACGGCACCGCAGGTCGGCTCTT # Right flank : TGCGGCCTGGCGGAAGTCGATCACCGCGTGCCGATGCTCTCCACGCCCACCCGAGGTGAGCACCGGCTCCCACACCACTTCGTCGACACCATGTCGTCGACACCACCGCGTCGGCGCCTCCCCGGTGCACTATCGTGTTGGATTGTGTTGAGTGTTGAGGACTTTCGTGGGGTGTCCGGTCGGCCCGTGGTCTCCGGTGCGGTGCACTACTTCCGCATACTCCCGCAGCAGTGGGAGCAGCGACTCCGCATGCTGCGGGCCATGGGGGCCAACTGCGTGGAGACCTACGTGCCGTGGAACCTCCACCAGCGCCGCCCCGGCGAGACCACCGGGGTGGCGGATCTCGCGGGCTTCCTCGACCTCGCCGCCTCACTGGACCTCGCGGCGATCGTGCGGCCGGGCCCCTACATCTGCGCCGAATGGGAGAACGGCGGCCTGCCCAGTTGGTTGCGCGCCGAGGACCGGCACGCTCCGCTGCGTTGTTCGGATCCGGGCTTCCT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 3571043-3571629 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3571043 29 86.2 32 ...C.......C.G..............G TCCGGCTTCGGTCGCGGGTGAGACTCCGGCTT 3571104 29 86.2 32 ...C........TG..............G GCACTGGTTTCATCGGCACCGCGTTGGTGCGC 3571165 29 89.7 32 ...C........TG............... AGGAGAGGTAAAAAATGTCGAAAAACCGAGCT 3571226 29 89.7 36 ...C........TG............... CCGATCGACGAGCAGCTCCACGCGCGGCGGCTGGAA 3571291 29 100.0 36 ............................. CCGATCGACGAGCAGCTCCACGCGCGGCGGCTGGAA 3571356 29 96.6 32 ............................C GGTTGCCCGCACTGCTCGCACACCGGCAGCTC 3571417 29 100.0 32 ............................. CCATTTATTCTCCCGGATGCGTTGGGCGGCTT 3571478 29 96.6 33 ............................C TTCTGGGCCGGGCAGGCTGTGCCGGGCCTGGGT 3571540 29 89.7 32 ...C.......A.G............... GCTTGCTTGTTCTCATCGGCCAGAGTCCGGCA 3571601 29 82.8 0 ...........C.G...........A.TC | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 91.8 33 GTGTTCCCCGCGCCCGCGGGGATGGTCCT # Left flank : CCCGTTCCCGGGTGAGCATCGGTTCGCTGCTGATGGATCAGGCGGTCATCGCCGGAGTCGGCAACATCTACCGGTGCGAGGTGCTGTTCCGCCACGGCATCGACCCCTACCTGCCGGGGCGGGCACTATCGCATGAGGAGTGGACGCTGATCTGGGCGGACCTGGTGACCCTGATGCGCGACGGTGTCCACACCGGTCGCATCGACACGGTCTACCCCGAACACCTGCCCGAGGCGATGGGCCGACCGCCCCGTGTGGACGATCACGGCGGTGAGGTATACGTGTACCGGCGGGCCGGTCAGGCGTGCCACGTCTGCGAGACCCCGGTCATGTCGGCCGTGGTGACCGCCCGCAACCTGTTCTGGTGCCCGGTCTGCCAGAAGGGTTAGCCGGGGGAGGAGCCGTGGCGGCCCCTTCCGGACTTCATCTACATAGTGGACAATAAAGTGATCATGCGTCGGATTCGGCCTCATCGCCGATAAACCCGCAGGTCGGCTCTT # Right flank : CTTCTCCTTCAGGCGACGTGTGGGTGCCAGGGGCGGGGGCGGGTGTGGGTTTGTCTTATGTGGTTGGTGGCTTGCTGGAGTGTCTTGATGTAGGCGGGGGTGTGTCGGTGGCGTGGTCGTTCGGGACGATCCGGCAGCACGATCCGGGAGAACTGGGAGAGGTAGTCGGTGGCCCAGAGGTAGAGGGCGCAGCCGGTTTTGCGCCACCGGTTTCCGCATTCGCTACAGATCTTTCTGAGTCGTCGCCGGATCGGACGATGTGTCTTGCGGATCTGGTTGCCCTGGCGGATGTGGTGGACGTCGTCGGTGGTTAGAGTGGTTTTCGACATGACAAGGAGTGCCTTTCCCTGTTGTGTGGCGACCACACCGTTTGCGGCGGTGGGTCGCCGTTTCTCGTTTCCGGGTGTTACTTGGTGTGTGGTGTTAGCCGTTGCAGAATCGCCAGATCGCCGGTTCACGGGCGGCGTGTTGTGCCGCGCGTGATTGTTGGTCGTGGCTGA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGGTCCT # Alternate repeat : GTGCTCCCCGCGTGCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 4089187-4089398 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4089187 29 96.6 32 ............................G GCAGCTATTCAGTCAGGCAAGTTGCGGCATGG 4089248 29 100.0 32 ............................. GAGATCGCAATCTCCAGCTCGCGGTTGGTCAT 4089309 29 93.1 32 .............A..............G TGGACATCGAGATCACGAGCGAAACCGTCTAT 4089370 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGCTCCCCGCACGCGCGGGGATGGACCC # Left flank : GTCCCGCCGACGGTGATCCCGGTCCGAACACCTACGCGGCCCTGCAACGGCTGGCCGCGCAGCACGGCTACACCGGACCCATCGACGGCGAGATGGGCCCGAACTCCTGGCGCGGAGTGGCCCGATTCGTCAACCAGAACCGGTTCGACTGACCCCGGCACCGACCCGTTGGACGTCGTTACGGCGTCCAGCGGGTCGCGAAGTCTCAGCCCGGTTCTCCTGTCGGCGTTGGAGGGTGCATGTGGGTTCATCGGGTGTTCGATACCGGCAGGCGGGTACAGATCGCATCCGTCCCGTCGTTGCAGGATCAAAGAGCCCACTCCGATCGTGAGCGCCGGTAACCTTGGGCCAGAATGGTTTCATCGACGGACACGGGCCTGCGAGAGCGATCGGATTCGGTGATGGCGTCGGGTGGCTACCGCAATAACTCCATAGTGGTGCTTGAAGTGATCATGGTCCAAAACCGGCCAAGATCACGATAAACCCGCAGGTCGGCTCTT # Right flank : CACATTCGAAGGCTTCCAAAGAACATCACGCTTGTGCTCCCCGCGCGGGGAGCACCACAGCGCTCCGGCTCTTTCGCATACCGAGCGTGAGGTGGCCGTTTCGGTGATCCGGTCACCTCACGGTTGGTGTCGAGGCGCTGAAGCGAACACTTCAGGATGGGGGCATGAGAACCAACACCTATGCTCCCGAGTTCCGTCTCGTCGTCACCGGCGGCGGCACCGGTGGCCACGTCTACCCGGCACTGACAACGGTGAACACGCTGCGAGAGCGGCTCGCCGCCGAGGGCGGTGACATGCAGGTGTTGTGGGTGGGCCAGGTCGACAGTCTGGAGGCCCGCGTAGCCCAAGCCGAGGGCATCGACTTCACCTCGGTCGCGGTCGGCAAGATCCGCCGGTCATCCAATCCGCTGAAGATGTTGTCGCCGAGGAACATCCGCGACATGGCCAATGTCCCGATCGGTGTGATGCAGGCCCGCAAGGTGTTGCGACGGTTCCGTCCC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 4268017-4268229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4268017 29 100.0 32 ............................. TGGGGCAATCCGTTCCGGGTGGTCGAGAACCG 4268078 29 96.6 32 ...........G................. TCCGTGTATCGCCCAGGATGAACAGGACATCG 4268139 29 100.0 33 ............................. TATCCGGGTTCGCAGTCCATCCATCCGGTTCCC 4268201 29 89.7 0 ..........................GTC | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.6 33 GTGTTCTCCGCACCCGCGGAGATGGACCG # Left flank : GACCCACCGCCGCAAACGGTGTGGTCGCCACACAACAGGGAACAGAGGTCCTTGTCATGTCGAAAACCACTCTAACCACCGACGACGTCCACCACATCCGCCAGGGCAACCACATCCGCAAAACCCACCGACCGATTCGACACCGACTACGCCGCATCTGTAGCGAATGCGGGTCTCGTTGGAGAAAGACCGGCTGTGCCCTCTACCTCTGGGCCACCGACTATCTATCCCAATACTCCCGGATCGTTCTGCCCGACCGTCCTGAACGACCCCGCCACCGACACACACCCGCCTACATCAAGGCACTCCAGCAAGCCACCAACCACATAAGACAAACCCGGAACCGGCCCCGCCCCTGGCAACCCGACCCCCGCTTCACCTAACCTGGACAGTGACCACCACACCAACAGCAGCAAGCCGACCCGCCCCGGAAGGTCACGAAATTGATACCAACCGATAACATAACGGCCAGCCCATGCCGGAGCCCCAGGTAAGCAAGA # Right flank : CCGAAGACGGAAAGGACCATGCGCCGTTTTACGACGTAATAGTGAACGCCCGACCGACTGCCAGCCCGACTCATGGTCGCTTATGGACGACACCGTCCTTCATCACGAAATCGACCTTGCCGGTCAGTGTGATGTCGTTGAAGGGATCGCCCGGCATCGCGACAATGTCGGCTATCTTTCCGGGCGCGAGGACTCCCAGATCGGGCAGTTCGAGTAGGTCCGCCGCGACGCTGGTCGCGGCCTTCAGGGCGCGAACCGGTGTGATTCCGGTGGACACCATCATCGGGAACTCCCGCCAGTTCTCCGAGTGGGGGAACATGCCCGCATCGGTGCCGAACGCGATCTTGACCTCGCTGTCGGCGATCGCCTTCGCGCTGTCCAGAACGGTCTTCCCGTACTTCCGGAACTTGGCGCGCTTATAGGCGGGTCTTCCCGCCCAGTAATCGTCGTCGTCGACCCGGCGGGCATCCTCAAGGACGGTGAACTGCGTGGGAACCAGA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGCACCCGCGGAGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 4366124-4365974 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4366123 28 100.0 33 ............................ GACGTACATAGTCAAGTCGATTTTGTCACTCGT 4366062 28 100.0 33 ............................ GTCTCGGCGACGGCCCTTACCCACACCCGGCCC 4366001 28 89.3 0 ..............C..........T.A | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 34 GCAAGCCCCGCGCATGCGGGGATGGACC # Left flank : CTGTAAGCCCCGCGCACGCGGGGATGGTCCCGGTCGTGTCGCCATCACCGTCGACGCCGCCCGGTAAGCCCCGCGCACGCGGGGATAACGTTCATGACACTGGCGCTGATCCGCCCGGATGCCGAGCCACGATCTCCCTTGTGATCCTTGCGTCACCATCATGACCGGAACGTGCGGCGACTAGAGTTGTAGGCAATGAACACATTGGATGAAGCCGTGCCCGCATCCGAACCGATTGACGTCCGCACCGTTCGCTGGGCCCACGGTTGGGAACTTCATATCTCGGGAGTAGGGGTCACCCAATGCGACACGCTGAGCCATGCGGCCGCCATGGTCCGCGACTATCTGGGCTCCCTAGGTCTGAACGCAGAAGCAGAGTTGCGGTTCAGCCACGACCGATGACGGCGGCAATCGAATCAGACGAGAAATACACAATGGACCGCTTAGTGATCATGCTCCGGAATCGATGAGGTCGGCGATAGAACCACAGGTCGGCCCTT # Right flank : CGACTCGGGAAACGATGCCGTAGCCGTGCTCGAGTAAGCCCCGCGCACGTATGGCACCCGCCGGCAGATCACAACCTCAAATATCCACTGTGGCCCGTAATGGGTGGAGTCAGTGGCGGGCAGAGATAAGGCCGGGCTCGAGTGAACGAGTCCGGCCGGGTGTCGACCATGAAAGTTGGAGGACAGACATGGAAGACGGCTCTAGTCTACGTGCCACCGAGCCGATCGCCAACTCGACACGCGGTCGGTGACACTTTCGATCGTCGCCGACGCTCACGAATGATGCCCCGAATCCTGGTCGGATTCGGGGCATCACCGATCGAGCGCGACATCAACCGGGCATCACCACAGGCACATGTTGCCCACGCAGTGGTTCTTGCCGAGTGAGGACTTCTTTTTCTTCTTCGCCGGTTTGCCGACCTTCTTGTACTTCGGAGGCTGCAACTTCGGCAGCGGCAGGCGACTGAGACCCCAATGGATGTTGCTGCCCCAATCGGTCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 4366805-4366532 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4366804 29 100.0 32 ............................. GATGGTGGCTACCCCGGCCACGGTGGTCGTGG 4366743 29 96.6 32 ............................G GCTGCTGCTGCGGCGGGTCCGATCCGGTCGTG 4366682 29 96.6 32 ............................T GGCCGCACGCTCCGCAGTCCGACGGGCTTTCT 4366621 29 100.0 32 ............................. GGTCGTGTCGCCATCACCGTCGACGCCGCCCG 4366560 29 79.3 0 .......................AACGTT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTAAGCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCATCGGAAGCAACATCGCGATTCATCCCGACCGACAGCACTACACCGAGGCGATCTACTTCACCTCGGAAGCCGCCGCCCGCGAAGGAGAGAAGAAGGAACCACCGCAGGAGTTGAAGGACCTGTTCGACGAGGACGAGATGACTCCGGAGTCGATGACGTTCTTCGATCTGACCGACCCGTGGCTCCACTCCCTGTGATGACCGGCCACGGCCCAATGCGGGCCGTGGCGGTCCGGGACCGTGGAGGTCTCGGGTGGTGGGCCGGGCGTGGTGGGCCGGGCATGGTGGGCCGGTAAAAGGGGTTCGGGCGGATCGTCTCTCCCCCAACGGGACGAACTTCGTCGAGATGTGTCGGGCGCCGGGTCACCGGTCGAAGTGACCCTGCGTCACTTTGCGATACTGACGGAACGGCGACCCGCCTCGAACTACACAGTGGATACCCAAGTGATCATGCTCCGGATTCAGAAGCTTCGGCGATAGAACCGCAGGTCGCCCCTT # Right flank : CATGACACTGGCGCTGATCCGCCCGGATGCCGAGCCACGATCTCCCTTGTGATCCTTGCGTCACCATCATGACCGGAACGTGCGGCGACTAGAGTTGTAGGCAATGAACACATTGGATGAAGCCGTGCCCGCATCCGAACCGATTGACGTCCGCACCGTTCGCTGGGCCCACGGTTGGGAACTTCATATCTCGGGAGTAGGGGTCACCCAATGCGACACGCTGAGCCATGCGGCCGCCATGGTCCGCGACTATCTGGGCTCCCTAGGTCTGAACGCAGAAGCAGAGTTGCGGTTCAGCCACGACCGATGACGGCGGCAATCGAATCAGACGAGAAATACACAATGGACCGCTTAGTGATCATGCTCCGGAATCGATGAGGTCGGCGATAGAACCACAGGTCGGCCCTTGCAAGCCCCGCGCATGCGGGGATGGACCGACGTACATAGTCAAGTCGATTTTGTCACTCGTGCAAGCCCCGCGCATGCGGGGATGGACCGTC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 4400615-4400282 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4400614 29 93.1 32 ...AG........................ TGCGGTCCCGATCATGCGGTGGGGTCGGGCAT 4400553 29 86.2 32 G.A.G.......................C GCCACCGGGACGACGGAGCTGTACCGAGGCGA 4400492 29 86.2 32 G.A.G.......................T CCGGGCGAGGCGTTCCGGGACCCCCAACCGTG 4400431 28 96.6 32 .....................-....... TAAGTGGAGGTGTACCAGGTCGAGTGAAGCTC 4400371 29 100.0 33 ............................. CGTATCTGCCGGGTCCGTCCACATCGATCACGG 4400309 28 72.4 0 G.A.A.........T......-.CT..A. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 89.1 32 ATGGTCCCCGCGCACGCGGGGATGGTCCG # Left flank : GGTGGTCGTCCCGGCCCCGGCTGGACAGCATCAGGCCCAACAGTTTCTTGCCGTATCGACCGACCACCAGCAGCGGTCGGTCCTTCCCCTGGCTCGGGTCGTCCTCATAGGGCACCCAAGACCAGACGACCTCACCGGGATCGGCCAGGCCGTCCATGTCGGGAGAGTATTCGATCGTCGCGAAACGTTCCGGCGTGTAGATCTCACGCACGCGTGCTTGAGGGGAGTCGGCGAGCATTGGCGCAGCCTAACCAACCGGCCGTTCACCGCCTCGCCGCCCCCGGTGCGTCGGCGATGGCCGACATCGGTCGGGAACCGCCTGTATCGCAACGGTTCCACGTCGGCCCCGCCGCGACGCCCACTCACGCCACGGTCAGCGCTGACTGCGATACTGTCCGCGGCCAATCCCGAGCCCACGGCCCGGAGAACTTCACAGTGGACCAAGAAGTGATCATGCGTCAGATCCAAGCCGTCCGGCGACAAACCCCATGTCGGCTCTT # Right flank : CTCTCCCATCGAAAACCGCTGGCGGAGGGCGCACTACGGTATCGATACTGGGCCCAGCATGAAAGAACACTCTTCACGACTGAGTCGTCGTCTGGCTCGCATTCTGCGGCATGATCCGGGGTCCATCGGGATCACTCTCGACCCGGGAGGCTGGGTTGGGGTGGACGTCCTGTTGACGGCCTTGAAAGCCCGGGGGATCCGGGTCACGGCCGAGCAACTGTCCGAAGTGGTCGCCGCGAACGACAAACGCCGTTTCGTCATCGCCGATGGCCGCATTCGCGCCCAGCAGGGCCACAGTATCCCGATTGACCTGGGGTTGGAGCCGTCCGTGCCTCCGGCGACGCTCTATCACGGCACCGCCCGTAAGAACCTGGATTCTATATTCGCCGACGGACTCACTCGGGGTCGCCGTCACCACGTCCACCTATCCGCCGACCGGGCCACGGCCCTGCGAGTCGGGGCGCGGCACGGAAAGCCAACGGTGCTGACCGTCGACACCG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 5133038-5132275 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5133037 29 96.6 32 ............................G TGAGGGGATCGTTAGGAGTCCTAACGGTGGGC 5132976 29 96.6 33 ............................A CGCCCGTTTCGGGGTGTCACAGCCTCCCCGAAA 5132914 29 100.0 32 ............................. CCGCTTAGCGTGGCTTTCTGCCATTGCTTGAA 5132853 29 100.0 32 ............................. CCGATCTCCTTTACCGATGTAGTAATCGCTAT 5132792 29 96.6 32 ............................A ATACCCATCCGGTCCTTGTTGTTCTCAAACCG 5132731 29 96.6 32 ............................C CCGACGACCAGTAGACGAAGGTCATAGGGGAG 5132670 29 96.6 32 ............................C TCGTAGTGCTGGACTGACGGGGCACAGAACCC 5132609 29 93.1 32 ..G.........................G CACTCGTTCGAATCCTCGACACCGATGAAGCT 5132548 29 100.0 32 ............................. CCAGGCGACATACGAACCTAGGCTCATTTGAT 5132487 29 100.0 32 ............................. GACTGGGCACAAAGGTGGGGGCCATCCGGTTA 5132426 29 100.0 33 ............................. CGCGGAAGCACGAACCGCGTCAAAGGTCCGCAC 5132364 29 93.1 32 ..........T.................C CCCGAGATCGCGGTGCCAGTGGTGAGTCCTGT 5132303 28 82.8 0 ...-.....................GTGA | C [5132278] ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.3 32 GTAAGCCCCGCGCACGCGGGGATGGTCCT # Left flank : CCACATCGACATCCAATGGGCCGACGGCTGGGCCGACAACCCGGCATCGTGGCGATACGCCATCACCAACGCCGCACTCCACCTCTACCGACAAGCAGAGGTCCGCATATGCGAAGGATGACGCCCAGCACCACACCAACCATCCAATGCCGACGCTGCTGCGGCGACGGACGTCAACTCGTCGAGATTCCCGTCGGCACCCGCGATGGACATCCCATCTACCGACTCACACCACAAGACTGCACCCCCTGTGACGGCTCGGGCTACCAGACCTACCGGCCAACCGGCGCGCGCTCCAACCCGTCGCCACACGGCCGACGGCAGGAAAGGCACCGATGAGAGCATTGTGGGAGTCCCTACACATGGCGTCGCCCGACCCAACTGAGAGGGCTAAACATGTCCCAGCGTCAACTTCCCACCAAGACAATTCCACAGTGGTTCCCAAAATGATCATGCTCCAGATCCGACCCACTCGGCGATAACACCCCAGGTCAGCTCTT # Right flank : CTGCGGGCAGCGTGGGACCCGGTGCGGGAGTTCGCACCGGGTGGTGGGTCGGCGGTGGGGCGGTTAGACCCGCTCCCACCAGGTTTTGGTGATCACCTTCTCGTCCAGGAAGTCGACGTAGTGGCCGGAGGTCACCGAGGCGACGAAACCACGGTCCAGCCCGCGGGGTTCCCGGCGGGCGAGCAGGCTGTCGAAGGCCATGTCGATGGTCTCGCGGTCCGAGGTGGTTCCCAACATCTGCGCCACTCTGTCGCACTTGTCGGCATCGATTTCGATTGAGCGCTGAGTCATCGTCCCTGCTTTCGGATGTCGACGAACGCCGGCGGACACACTTCGGGTGCGGCGCCGTTCACCCTCACCGTAGTTGCCGACTCACCGTTTCGAGCGGCAAACCGCGCATCCGGCCGACCTCGTCGTCACGGGCGTCGTAGGCTCGTCCCATGAGTGTCGAGGTCACCGATAATCCCGACCGGCAACGGTACGAGGCACGCATAGACGGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 5135727-5135997 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOW01000001.1 Stackebrandtia endophytica strain DSM 45928 Ga0264350_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5135727 29 100.0 32 ............................. ATATAGCAAAACACTGTGGTTATGAGTCGGCC 5135788 29 100.0 32 ............................. GGCTCCCAGAACACAATAGGCATACCTGTTTC 5135849 29 93.1 32 ...........G................C GCCTCGTCGAGCGGTTCCGAGTTCCACAGGAC 5135910 27 89.7 32 ................--..........C CGACGGCGCCCCGGGACCGCTAAGGCTCGCGA 5135969 29 82.8 0 ...C........GA.......G.....G. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTGTTCCCCGCACGCGCGGGGATGATCCG # Left flank : CGCGGATGCACCCGGGTATGAGTGGCAATTACACGCTTCTGACTCCGGCAAAAGGAGTTCTCGCTGCTGGACGGTTCGTGTACATCGAAGGGGAGGGCGTGATTCGGTATGAGGAGGCCGCCGACGTAGTGTCTCACCACGACAAAATGTTCCGCACGGCCTGGAGCCGAGCAGAGACCTTGGAGGATTACCTAGATGGCCGGTAACTGGCGCAAATCCCGTCGCAGTCAGGCGGCCGGAAACAACTGCGTCGAGACCAGGTTGAACGGCAGCTACGCCGAGATCCGTGACAGCAAGGCCACCGCTAGCGGTACGTTGGCGGTGGCCTCATCGGAGTTCGTGGCTCTGCTGGAGAGCGTGAAGTTAGTCAGATGGCTGGCTTGGGGATGCATGGCCGAGTGACGACGATTGGTCCTTCGAGCATTAATTCCATAGTGGAAGCAAAAGTGATCATGCTCTAAGTTCGGCGAGCTTGGACGCAAATCCGCAGGTCGGCTCTT # Right flank : GTTTCAGCGCCTACCGCTGCATCACGCCCGGCGGCAGGTGTCTTCCACCCCTACGGTGCCTACCTTGGTCATGACGACGGGGGTGGTGCGCGATAGTCGCGCACCACCCCCGGTTACGTTGGGGCGCCTCGGGGGCGACCCGGGTGGGTTACTCGGCGAAGGTGCGGCCGGTGACCTTCTTCGCTACTCCGGAGTGGTCCAGGTACGGCGTGATTCCACCGAGGTGGAACGGCCAGCCGGCGCCCAGGATCATGCACAGGTCGATGTCCTCGCGGGCGGCAACGACTCCCTCGTCCAGCATGCGACGGGCCTCGTCGGCCACGGCCGCCAGCGCCCGGTCGCGGATCTGCTCCGGCGTCGACGGGTTGGTCCCGAACTCCATGATGGAGGGAATATCCGGGTCGACCGATGGCTTGCCCTGCGCGTCCCACACGTACACACTGGACTTACCGGCCTCGACGAGCCGGTCGAGGTTCGCCGATACCTTGTACCGGTCCGGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //