Array 1 54625-52080 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIGV01000010.1 Streptococcus suis strain LSS49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 54624 36 100.0 30 .................................... TATTCGCCGGACTCCTATGGGCTACCTATG 54558 36 100.0 30 .................................... GCACCCACATTCTTCGCAGGTCTCAATTTT 54492 36 100.0 30 .................................... TGCTCTGATTGTCTTTTGACAGCAGGGGCT 54426 36 100.0 30 .................................... TTGGGAAGAACACTATGGACCTATTCCAAG 54360 36 100.0 30 .................................... TACGACTTGCCAATCCAAGCAAGCGAACTA 54294 36 100.0 30 .................................... GGTGGTACCTGCGAGCCTTCTCTCTGCGCT 54228 36 100.0 30 .................................... ATCCCAAGAGTCTGCAAGTCCTTCTGGATC 54162 36 100.0 30 .................................... GAACAAACTGTAACGGATTTAATGCGGGTA 54096 36 100.0 30 .................................... AGCTGAAATGCAGGCGAAAACTAAAGAAAA 54030 36 100.0 30 .................................... CGAACGATTGGAGAGGTTGTGGATGTGTAT 53964 36 100.0 30 .................................... TTATAAAATTTGACGAAGACACACTAGCTT 53898 36 100.0 30 .................................... TAAGTATAGATGTGTGTGGTGCTACGAAGC 53832 36 100.0 30 .................................... CCATCAAAAATCGCTTGACGTCTGGTGCTT 53766 36 100.0 30 .................................... TATTCAGCTACGAGAAGGGCAACCGCTTTG 53700 36 100.0 30 .................................... AATTAGCTCAAAGTGTTAACGTGTCTAGTT 53634 36 100.0 30 .................................... CTGATGTTGTTCGACACAACTTATCAGAAG 53568 36 100.0 30 .................................... GCTTTTGATTGGATATGATGCTGAATCGCT 53502 36 100.0 30 .................................... TCATAGAAAACTCAAATTTCAATCTCTAGT 53436 36 100.0 30 .................................... TACAATGCTTTCAGCTTTAATATTCAAAGC 53370 36 100.0 30 .................................... GCTATGTTATGTCTGTGTGGTTTGAGGAAT 53304 36 100.0 30 .................................... TATGAGCGAACAGGCCTATCTTGCTACGCT 53238 36 100.0 30 .................................... TCTTGCAGGCAATTGCTGATGATAAAGCCT 53172 36 100.0 30 .................................... CACGACGACCAATAGCTGGCATCGAGTCGC 53106 36 100.0 30 .................................... CAAGTATAGATGTGTTTGGTGCTACGAAGC 53040 36 100.0 30 .................................... TGTAAAGACTGTCATAATAAGCGCCACAAT 52974 36 100.0 30 .................................... AGCTACAAGGGTTCTTCTTTCTTCTGGTGT 52908 36 100.0 30 .................................... GGAAAAACTAACCAACACGCAAAAAGATAT 52842 36 100.0 30 .................................... TCAGTCTTAGCGACATCTGTGACGGTCTGT 52776 36 100.0 30 .................................... TTCCTTTGCGTTAGCCCATCTACAGTTAGA 52710 36 100.0 30 .................................... GGACAAACAACGAACAGACAGAAAATGATT 52644 36 100.0 30 .................................... TGTATTCAAATCTATGTTAACCTCATTTTG 52578 36 100.0 31 .................................... TTGACTTATCAGCACCTCATTCTTCCTCAAA 52511 36 100.0 30 .................................... AACGCTAGGGAGCTAGATTTGAAAGCCTAA 52445 36 100.0 30 .................................... ACACCGTTTGTAAATAAGTGGTAGTCAAGG 52379 36 100.0 30 .................................... TATCATCTCAACGCTGATATGAATGTCATA 52313 36 100.0 30 .................................... TTACTTTAATTGGTAATGGTTATGACGCAT 52247 36 100.0 30 .................................... GGCTACCCACACAATAAATGCTGTCAGAAA 52181 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 52115 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCCTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTAGGAACTGGTTCGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //