Array 1 27986-27236 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEG01000023.1 Legionella pneumophila strain NMB001870 503169-08_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27985 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 27925 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 27865 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 27805 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 27744 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 27684 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 27624 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 27564 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 27504 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 27444 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 27384 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 27324 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 27263 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : TTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31502-28352 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEG01000023.1 Legionella pneumophila strain NMB001870 503169-08_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31501 28 100.0 32 ............................ AGATTACCGTTGCGGTCGCACCCGCTTTCCAA 31441 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 31381 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 31321 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 31261 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 31201 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 31141 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 31081 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 31021 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 30961 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 30901 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 30841 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 30781 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 30721 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 30660 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 30600 28 100.0 32 ............................ AACCATTGAGGAATTTATACAAAGCTTACCCG 30540 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 30480 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 30420 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 30360 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 30300 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 30240 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 30180 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 30120 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 30060 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 30000 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 29940 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 29880 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 29820 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 29760 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 29700 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 29640 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 29580 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 29520 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 29460 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 29400 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 29340 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 29280 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 29220 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 29160 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 29100 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 29040 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 28980 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 28919 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 28859 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 28799 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 28739 28 100.0 32 ............................ TCCTGATTATGTTTTATCCAAATGTAAATTAT 28679 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 28619 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 28559 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 28499 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 28439 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 28379 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : TTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //