Array 1 6501-7459 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIYF01000115.1 Enterococcus faecalis strain 2SIL2 2SIL2_S23_L001_R1_001_contig_129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6501 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 6567 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 6633 36 100.0 30 .................................... AAATCACGAGAAAGAACGGCTTCTTAGAGA 6699 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 6764 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 6830 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 6896 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 6962 36 100.0 30 .................................... AAGCTTTTTTATAGGCTTTTTCTGTACCAT 7028 36 100.0 30 .................................... TTACTATCTCTCTGCTAGTTGTACCAGTCC 7094 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 7160 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 7226 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 7292 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 7358 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 7424 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : AATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 174-870 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIYF01000041.1 Enterococcus faecalis strain 2SIL2 2SIL2_S23_L001_R1_001_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 174 37 100.0 29 ..................................... ACTCCACGTGCTTCCATTTCAAAAGTTAG 240 37 97.3 29 ....................................A TTTTCATAGTGACCATTTGCAATATCTAC 306 37 97.3 29 ....................................C TAGAATTTAGTTAAAACAAACAAATTGAA 372 37 100.0 29 ..................................... GGTGCACCCGAATGCCACACTTTCTTTTA 438 37 97.3 29 ....................................G TTAGCTGGGCGGTTCAATGTGGTCATCTA 504 37 97.3 29 ....................................A CGTTTGATTGCAGACATTTGTAAACGATA 570 37 100.0 29 ..................................... TGCGATAATGTTTTTCAATGTTTTTGTCA 636 37 100.0 29 ..................................... GCCTGCATTAAGAAATAGCTTGATTGTTC 702 37 97.3 29 ....................................G AATAAGTATCCAGTAGTTATGAAGGCTCT 768 37 100.0 29 ..................................... GCTAAAGGAATTGATGATTGATATTGTGT 834 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 11 37 98.5 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTCCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : ACTACTTTGAAGTAGTAACGAGTGCCTTTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAAGGTGAAAGGAGGGGGAAAGGTCCCCCCTTTTGTGGGGAAGGGCTTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 279-711 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIYF01000042.1 Enterococcus faecalis strain 2SIL2 2SIL2_S23_L001_R1_001_contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 279 37 97.3 29 ....................................T CATTATACCCGAATAACACGCCTTTAAGT 345 37 97.3 29 ....................................C AAAGCGTTCTGGTTATCGTCTCAGAATAG 411 37 100.0 29 ..................................... AATCAACTATCCAGTCGCACATGTCCGCA 477 37 100.0 29 ..................................... TCAAAAGCAGTTGTGAAGACACCTGAAGC 543 37 97.3 29 ....................................G ACTGCTATCACGAGCGCTTTACATATATT 609 37 94.6 29 ................C...................C CAAGTTGGTACGATTACTCAAAAATTAGA 675 37 67.6 0 ......T..C.........A.A..ACAA..T.TC..C | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 93.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : ATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAGG # Right flank : ACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 13168-13600 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIYF01000044.1 Enterococcus faecalis strain 2SIL2 2SIL2_S23_L001_R1_001_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13168 37 100.0 29 ..................................... AAGCAGCTTATGCCACTTACTGGCGTGAC 13234 37 100.0 29 ..................................... TGTGTTTCGGTTTCAGGAACTTCGGCATC 13300 37 97.3 29 ....................................A CACTGCTAAACGACTTGGCAAAGAGTTAT 13366 37 97.3 29 ....................................C GTACTCACAAACAACGTTGCGACATATTA 13432 37 100.0 29 ..................................... TTGCTGATAAAAATATTATAACAGAAATG 13498 37 94.6 29 ...........................C........C TATAGAATGGTAGTAGGTACCGACGCTAA 13564 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.5 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGAGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : TTAAACGTTCTATTCCCATTCGTTCCGACTGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGACGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGTTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 713-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIYF01000043.1 Enterococcus faecalis strain 2SIL2 2SIL2_S23_L001_R1_001_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 712 37 100.0 29 ..................................... TATTGCTTCACCTATTGGAATTGTAATTG 646 37 100.0 29 ..................................... TCTAAAAATTAATAACATCACGCGGATTT 580 37 100.0 29 ..................................... TGTTTTTAGTAGCTCTATATTCTTCTAGA 514 37 97.3 30 ....................................G TGACGTGGGCTAGACGGTAGAAAAAAGTTT 447 37 97.3 28 .........................A........... TAAAAGCAAAAGACCGTCTACAGCAGCT A [411] 381 37 100.0 29 ..................................... CTTGCATAAAAGGGAACAAATACATTAAT 315 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================== ================== 7 37 98.8 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : AAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGTGGTGATAGTTTGTTTTTTAACAACATGGCTATAAAACTCATCATAGTATCGTAAAACTCTTTCTGG # Right flank : CTCGGAGAATTATTTTTTTCTCCATGATTCCGTATTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTGAATTTTTTCTTCACGTTTATTATACCAAACTTTCTCCTTCTTGGCGGAAAAACCCACCATTATTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGCAACCAGATGAAGGCAACCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //