Array 1 1686-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLI010000011.1 Ligilactobacillus salivarius strain An453 An453_contig-110_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1685 36 100.0 30 .................................... AAGAGAAGCGCATAGGAAATATGTAATTTA 1619 36 100.0 30 .................................... AATGCGAGTAGGAGGTCCAATTATGGATAC 1553 36 100.0 30 .................................... ATACAAGGTGGATAGTTACAGACTGTATGA 1487 36 100.0 30 .................................... CCATGTCTAATCAACCAATAAACTCCACTA 1421 36 100.0 30 .................................... TGCTAAAGGTAATCTATCTGGAGATGATTT 1355 36 100.0 30 .................................... GTTGGAAGTTAATGTTCCTGGTAGACCGTG 1289 36 100.0 30 .................................... CCTTAGTTTTCTTTGTACTGATCCAGCGTT 1223 36 100.0 30 .................................... TCTGCCAGTTTCTGTTATTGAAAAGCCTAT 1157 36 100.0 30 .................................... TACTGGTTTGCAAGCACAAGGAAAGACTAA 1091 36 100.0 30 .................................... TTCAAGATTTTACAGATAAATCAGGCAAGA 1025 36 100.0 30 .................................... CAGAGATTAGAAACGTTTCACGAGAAACAT 959 36 100.0 30 .................................... GGTTTTTGAAAAAGCAAACAGTGCTATTAA 893 36 100.0 30 .................................... TAATGGTGTCGTTACAACATTCCATTAGAA 827 36 100.0 30 .................................... AACACTTGAAGAATTGTCTGAAAAATTTGG 761 36 100.0 30 .................................... CGAACGTAATGCACCACTACCTGATGAACA 695 36 100.0 30 .................................... CGGTTATCTAAAGTCGGAAACACTAACGAT 629 36 100.0 30 .................................... GAAGTGCGGAACAATATTATTAATTAATAT 563 36 100.0 30 .................................... TCCAAAATTAATCAAAACACCAGATATGGG 497 36 100.0 30 .................................... GAAGATAAACACGTTTCAAGACAAATTATC 431 36 100.0 30 .................................... AGTCTGTTGGTGCTGTTGCTAAGAAATCAA 365 36 100.0 30 .................................... TGGCAGTTCAACAATCTGATAAGCGTATTT 299 36 100.0 30 .................................... ATGATACGCCTATCAGAATTGGACGTAATA 233 36 100.0 30 .................................... ACCAAGTCAAATGATGATTGAAGAGCCACA 167 36 100.0 30 .................................... TACTGGTTTTCAAGCACAAGGAAAGACTAA 101 36 100.0 30 .................................... AGAAATACTAGAAACACCTCACGGAAAGCA 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : AACAGACCGAATTAGCAAAAAATATATGAATGTGTTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCATATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAGATAGAAAAAGAATTATAGGTCTAACCAATGTCGCGCATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGATTAGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTAATTATAAAGTAACG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 907-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLI010000129.1 Ligilactobacillus salivarius strain An453 An453_contig-110_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 906 36 100.0 30 .................................... AGAAATACTAGAAACACCTAACGGAAAGCA 840 36 100.0 30 .................................... TGGGTATTTCAAAATAACGAAAAATGTTAG 774 36 100.0 30 .................................... GGACTTTGGTTCAGTAAACTGGCCAGGCTC 708 36 100.0 30 .................................... TGATATTTTAGAAACCATTATTGATAATAA 642 36 100.0 30 .................................... GAGATTTAAAGTATTTGATAGAGTTATTAA 576 36 100.0 30 .................................... ATCTAAAGAGGGCTTGTATCTTTATCCTAA 510 36 100.0 30 .................................... ATACAAATTTTTACTACCACAATTCAATCT 444 36 100.0 30 .................................... GGATGAAGGTAGAGTATCATCAGGTGTGCT 378 36 100.0 30 .................................... CTAGCTCCATAAGCCACATACCAAACGTTT 312 36 100.0 30 .................................... CCAAATCAGCGTAATCTACATGAATTCCCA 246 36 100.0 30 .................................... AATCCCACACGGTAGCATATTAGAACTTGA 180 36 100.0 30 .................................... GATTATCAAAGTGTTACAACGTGGGCACTA 114 36 100.0 30 .................................... ATGCCATTGATGGCAAAGAGCATCATTATC 48 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : ATGTTAAATCAATAAGGTTAAGACCTACTGGTTTGCAAGCACAAGGAAAGACTA # Right flank : CTATCCATTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2-365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLI010000162.1 Ligilactobacillus salivarius strain An453 An453_contig-110_161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... AAGGAAAATTGCTAAGTTGCAAGATGTTGG 68 36 100.0 30 .................................... TAATTGAAATCATTAGTGATCGCCTCCATC 134 36 100.0 30 .................................... CATTAATTCTAACTGCTATATCTGTTGCAA 200 36 100.0 30 .................................... GTGTAATAATGTACAGATTTTTTGTTCCAA 266 36 100.0 30 .................................... AATTCTTTATTACAAGTTAGATGGAGATGC 332 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : TG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //