Array 1 165904-166335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 165904 36 86.1 30 T..T..T.TT.......................... TCTTTTTAGAAAGTAGTGGGAAAATGGAAA 165970 36 100.0 30 .................................... TAAAAGATTACAATGAAGGTTATCCACTTC 166036 36 100.0 30 .................................... TTAACTCATGGGATATGAATTATCATTTAG 166102 36 100.0 30 .................................... GTATTAGGAACAATAAACGACTCTTTTTTA 166168 36 100.0 30 .................................... TCAAATTAATCGTTCTCTTTATATCTGGGA 166234 36 100.0 30 .................................... TGATTATATCGAAAATCAAATAAATGCGCT 166300 36 77.8 0 ..........................T.GAA.GGCA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 94.8 30 GTTATAGTCCTCTTACATTTAGAGGTAGTCTTTAAT # Left flank : TCGTCATTTTTAAATTTCCTTTTAATGAATAAGGCTAAATCTTTTTTAGGTAAATCTTTTAAATCAGTTAAAGACATCTTTGGTTTCCTTATATTTTTATTAGTGTCCACTCCCACTAACTTCTCAAATATCTGACTAATATAATCTCCGTTTTTTTTTATAGTTGCATTTTTATTTTCTTTTTGAGAATTGATAGTTTTGCTATGAAAACTTTTATTGAATGAAGCTTTTTTCAATCGCAAAATTTCTGCAGTACTTTTACGGCTTTCCTCATTTAATTTCAAAGTTCCATATTTCTCTTCTTTTTGCATTGTTACTTGATATAATTTATTATCCAATTTTATTTTCACTTTTGTTATACGCATCTTAACAATACCCTCCATTCTAATACTATATATCTATCTTATCATATTTTCATATAAATAAATTAAATACAACGAAAAAGAAGTAGGAATAAATATTCCTACTTCTTTTTCTTAACTATATGTAACTCTTTTATT # Right flank : AACAGTTTTTTTGACAAATTTTATAAGGTGCAGAACTTCTTTCCGTATGCTATTCCGATTGTCCTTGACAATGAGCCTCCTCGGATGTGACGATCTTCGGCAGGAGCTAACAGTTAAAGTTAGACTGCCTCGCTAGCGTTAGCACATCCGAGCTCATTATCAAGGATTCGCTGCGCCAATCTCTGGTTACGGTAACCAACCGGTGTCTCGTAGCCAAGTGTACCGTGCAACCGAAGGTGGTTCCACCAATTGACATAGTCAAATAACTCCAAATCCAATTGTTGTAAGGTTTCAAATGTGTATTGATAGACAAATTCTACTTTCAACGACTTATAAGTTGATTCAGCTACGGCATTATCAAAAGGACAGCCTTTATGACTTAATGATCGATTGATATCAAAAGTTGTTAATAATTCATCAATAGCTTGGTTATCAAACTCTTTTCCACGATCAGTATGAAAAATCTCAACCTCTGTCAGAGGTTGTTTGATACGGCTAAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTCCTCTTACATTTAGAGGTAGTCTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 167735-168298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167735 36 100.0 30 .................................... TCTCCTTTTTCATGAATGGCCGTTAACCCT 167801 36 100.0 30 .................................... TGCGACAATCAGTATGATTACGATGCTGAC 167867 36 100.0 30 .................................... TTTTACATAAAAAAAGGAGGGTATAATCAT 167933 36 100.0 30 .................................... TTACGCCAAGAATTATTAATGTTGATGCAA 167999 36 100.0 30 .................................... CTTTATCCATGAATTAACTCATGCGATTGC 168065 36 100.0 30 .................................... AGAAATATATTAATAGCGACTTATATTACA 168131 36 100.0 30 .................................... ATATTGGAGAAAAAAGAAAAAGATTAGTCA 168197 36 100.0 30 .................................... TCCTCTATTGTACTTAACATCATCTACTGA 168263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTATAGTCCTCTTACATTTAGAGGTAGTCTTTAAT # Left flank : TTTGGTTTTGATTGATAATAATAGGACTGACGTGATAGACCTAATATTCTGCACATCGCTGATATAGGGTAAAGATGCTTATTCGCATCGATTACTTGTCTCTTCGTCCGAATATCAGCGCTGCTTGCTTTAAAATATCATTTTCCATTTCTAATTGCTGGTTTCTTTTACGTAGTTCTAACAATTCTTTTTGTTCAGGCGTAAGATTATCTTTTTCTTTGAATGAACCACTCGTTTTAGATTGCTTTACCCATTTGTCAAATGCTGAAGCCGTTAGTTCATATTCTCGAATGATTTCTACACGTGGCTTTCCAGCTAAGTAAAGATTGACGATTTGTTGCTTGAATTCTTGTGAAAAAGTTCTTCGTGTTCTCTTAGACATAAAAATTCCTCCTGGTATGTTTTCTTCTAGTCTACACACCTTAATTTTTCTGTCTAGTTAATTGTAGCCTATCCAGGTAGTCTTTAATCGGAGTTGAGTTTACTCTGACCAATAAACG # Right flank : TACCCTTCTATCGTATCATAGACAGCTCTAAGGTTCAATCCTTGTTTTCTTTGACTAAAAAATGGACAACACTCTGTAAATTCTGATATATTTTGTTTAAAATCGATTCATCTTAGCCAATACTCACCTCAGTCTGCCACTTTTATGTTTAAAATAGATGTTCTGATAGACTAATAAAAAAGACGTCTCTTTTAAAAGAAACGTCTTTTTCCAATTAACTTATTTTTTAACTAAAAGTGTTACTGATTCAACATGATTTGTTTGTGGGAATAGGTCAACTGGTTGAACTTTCTCAACTGAATAACCACCTTCTGATAGTAAAGCCAAATCACGAGCTAGAGTAGCTGGATTACAACTTACATAAACGATTTTCTTAGGCATCATTGCTAATGTAGCTTCAATAAATGTACCTTCTAATCCTTTACGAGGCGGATCAACAACTAATAAATCAACTGCTAATTCTTTTTCGCTCCATTCAACCATCACTTCTTCAGCTAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTCCTCTTACATTTAGAGGTAGTCTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1687137-1688214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1687137 30 100.0 36 .............................. CTAACAGTATAGAGATCATAGTCTTCATCTGTAATT 1687203 30 100.0 34 .............................. ATTACAGATCTTTCGTTACAGCGGTATTCCAGAG 1687267 30 100.0 35 .............................. CAGCATCTTTATCAATCAACAAACTGTCGCCCTCG 1687332 30 100.0 37 .............................. ACGACTAAACTGTATAAACCTAGCAAAGTCACGCTAC 1687399 30 100.0 35 .............................. TGCCTTCTTGGATGTCGTCCTCGGTAAATATCAGT 1687464 30 100.0 35 .............................. CTTAAAAATAACGTCGACTACTCCATTGTCGTCTC 1687529 30 100.0 36 .............................. TTCTAATAAGGCTCCAAAAGTCTCTCCCAATGTTAT 1687595 30 100.0 36 .............................. TTTGCTGTTGAAGTAGATGGAGTGCCGCAATCTGAC 1687661 30 100.0 37 .............................. CCTTCTACCTGTTTTGTTGCTTTTTTACCTTTAAACT 1687728 30 100.0 35 .............................. TATTTACGAAACCATCGGTGACCCACGTTACACCA 1687793 30 100.0 35 .............................. TCTGAAATATATGTTATAATAAGTTATAAGTTAAT 1687858 30 100.0 36 .............................. TTTGAATTTGGTCATTGATAATAAAAATACCTAACT 1687924 30 100.0 34 .............................. AGGCTTGATGCTCGATATTAGAGTATGTCGCTCT 1687988 30 100.0 35 .............................. ATTATATTGTGTAGCAAGCGCTAAATCGATTTTCT 1688053 30 100.0 37 .............................. TTGTACGCACGCGATGTGATGATTACGTCAGGATTTG 1688120 30 100.0 35 .............................. ACCTATCTGGTGAAGAAGGAGCTTCGATGTTGGCC 1688185 30 86.7 0 ......................T.CAT... | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.2 36 GTTCTTAATCTAAAATAGTGAAATGTAAAT # Left flank : TTAAGATTTGGTGGTGAGAAATGTATATTATATTGATTTATGATATTCCTTTAGAAGAAAAAGGAGCTAGGGCTTCTCGTAATATATTTAAAATTTGTAAAAAATATTTAACACATGTACAAAAATCTGTTTTTGAAGGAGAGCTAACCCCAGCATTATTAAAACAGCTAGAACTAGAGTTAGAGCCATTTATTAGAAAAGATTTAGATTCAATTATGATTTTTAAAAGTCGTAACAAAAAGTGGTTGGAGAAAGAGTTTTGGGGAGTCGAAGAAGATTTAACGTCTAATTTTTTTTGATATTTTGAAAATCTGTCGACCATCAATAGTGCAAAAAAGTGGGGAGATCGACAGATTTGCTTAATCCCTTGGTATATCTGGATTTTTAGTGAAATGGCTCGTTCGATATGTTAAGATTAGAGAGTAGAAATCTTCAAAATGAGTAGGTCGACAGATTGCCCCTTAGAAACCCTTGGTACTAAAGGGGTGAATTGGGTACCT # Right flank : TAAAATAGTAAGGGAATCTGTTGAAATATATTTTGAGATTAAATGATGTTATGTGAAGGAAAATGAACTTTTTTTAATTTAGGATTATTTCAAAATTTAATTTTTAACAAGCTCATTTTTTTATGAAAAACTGTCAGAAAACTATTGACAAAAGGGCTAATTAACAGTATTATGGTAGATGGTATTGTTTGCCCCACGATGAGCCCCGGAAACTTATTGTGCATTCAAACAAACAGATAAGAATATGGAGGAAAAAAACGTGCGTACAACTTATATGGCTAAACCAAACGAAGTAGAACGTAAATGGTACGTAGTAGATGCAACAGATATTCCATTGGGACGTCTTTCAACTACTGTAGCAACCATCTTACGAGGCAAAAATAAACCAACTTTCACACCTAATGTAGATACAGGTGATTTCGTGATTGTAATTAATGCTGACAAAATTAAATTAACAGGTAAAAAAGCAACTGATAAAATTTATTATCACCATAGTGGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAATCTAAAATAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 1718191-1717765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1718190 30 100.0 36 .............................. CCCATAGAACGGAACTTAGTTTCACCACTACCATTA 1718124 30 100.0 35 .............................. TGTAATCCTGATATCTTTGAACAGACTTATGAGTT 1718059 30 100.0 36 .............................. TGATTAACGTATTCAGGCGCAAACTCATATAAATTG 1717993 30 96.7 36 .................A............ GCCGGAAGCACAACTCCTTACGTCACATTACACGGT 1717927 30 86.7 34 ...A...........C.A..G......... ACGAGACAATCTTCGTTATATATTTTATTTAACT 1717863 30 80.0 38 ...............A...AC..G...G.C TAAGCTGTTCCTATTGCCACAACCTCTTCAATTCACCT 1717795 30 70.0 0 ........C.....C..TAAA..C...G.A | T [1717767] ========== ====== ====== ====== ============================== ====================================== ================== 7 30 90.5 36 GTTCTTAATCTAAAATAGTGTAATGTAAAT # Left flank : TGATAAAAATATTCTAAACCGTTTAAAAAGAGCTGAAGGACAACTTCGTGGAATCCAAAAAATGGTTGAAGACGAAAAAGAATGTGTAGATGTGATTACCCAACTAAGCGCCGTCCGCTCAAGTGTCGATCGTATTATGGGGATTATTGTTGCTGAGAATTTAAAAAATTGTCTTGAAAATCCTGAATTAGATACAGAGAATCAAGCAAAAAAAATCGAACAAGCCGTTCAAATGATTATGAAAAAATAAAATAGACATCCCCTCTCTAGTATACCAACAACTAGGAGGGGATTTTTTGAGGCTATGCCATCTGTCGACCTCCAATAATGTAAAAAAGTGGGGAGATCGACAGATTTGTCCAATCCCTTGATACATCTGGATTTTTAATGAAATTGTTCCTTCATTATGTTACTATTAAAGAATAGAAATCCTCAAAATGAGTAGGTCGACAGATTAGGTCTTTGAAACCCTTGGTATTAAAGGGCTGAATAGGGTACCT # Right flank : ATCACAAAATACTGATTTCATACGTTTTAGTTTATGCTTTTCTATTTTTTAGAACGGACTCACTACTATACCTTAGCTTACATATGGTAATTATCAGTGTTAGACCTAGTGTAATGGAATTTGCAGCAATAAGTGGCACATCCCCTTTAAAAAGACCATGAATCAACCATAAAAAAACGCCAACTACTTGCATCAAGCACGTCTGTATAGAAATTGAGCTAGTCTCTTTCGTTTTGAGAATTTTAACTACTTGTGGAACAAAAGCTACTGTTGTGAGAATGCCAGCCAAACTTCCAATCATTTTTTTACCTCGCTTTTCTCTATCTTTCAACCTATCTTATTCAGTCAATTTTTCCATTTTTAATACTAGCAAACCACCATGTAAACTTTTATCCCTAGAAATCTCCCAATTTTTATTGGCTATCTCCTGAGGCGTTCCAACAAATGAAACTTGCTGATTCGGTAATTGTCCAAATAATGCCGTTACTTCCCATTTTATA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAATCTAAAATAGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2459220-2459585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2459220 36 100.0 30 .................................... TCTATCAGTAGACTATCCACGTCTCTAACT 2459286 36 100.0 30 .................................... CATCCATTAATTCTTTATAAGCTTCTTCTA 2459352 36 100.0 30 .................................... AGGACTTAAAATATATGTATTCTAGTTCTG 2459418 36 100.0 30 .................................... TCCTCAATGCTTTTATTTTGAGCGTTCGCT 2459484 36 100.0 30 .................................... TACCGACTAGAGAACTCTTTAGTCACTTGA 2459550 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 ATTAAAGACTACCCCTAAATGTAAGGGGACTATAAC # Left flank : CAGAGGTTGAGATTTTTCATACTGATCGTGGAAAAGAGTTTGATAACCAAGCTATTGATGAATTATTAACAACTTTTGATATCAATCGATCATTAAGTCATAAAGGCTGTCCTTTTGATAATGCCGTAGCTGAATCAACTTATAAGTCGTTGAAAGTAGAATTTGTCTATCAATACACATTTGAAACCTTACAACAATTGGATTTGGAGTTATTTGACTATGTCAATTGGTGGAACCACCTTCGGTTGCACGGTACACTTGGCTACGAGACACCGGTTGGTTACCGTAACCAGAGATTGGCGCAGCGAATCCTTGATAATGAGCTCGGATGTGCTAACGCTAGCGAGGCAGTCTAACTTTAACTGTTAGCTCCTGCCGAAGATCGTCACATCCGAGGAGGCTCATTGTCAAGGACAATCGGAATAGCATACGGAAAGAAGTTCTGCACCTTATAAAATTTGTCAAAAAAACTGTTGCCATTCCACTAGCTTAGTTGCTTT # Right flank : CTGCTTTTGTTAAATTGATTATTGGGTCTTCATTAAAGACTACCCCTAGTAAAAAATAGTTATAATTTGTGAGTCATAGACATACTAAGGGAGAATTGAAACTTAAATTTGTATCTGATTATTTTAGGAATTAAACTAAAATAATTCAGATGCTTTTTTATTTTTTTGAAAATGATAATTTTTGATAATAATATTGTTATATATGGTAGAATTAAATAGTAATAGATGAATTTTAGGGGGAAGAGATATGAGAATGACGAAAGTTAAAATTAATGGTAGTCCGGTTAGTATGAACCGAAGTAAGCTAAATGGTCATTTAGTTTGGAATGGGACTACAAATACAGTAAATATATTAACTAAAAAAGAACAATCTTTTGCGGCTAGTTTTTTGAATAAAACATTAGTGAAAGCAGATCAAGTTAAAGGTTATAAGGTTTTGGCAGAAAATATTTTTATTATTTTTGAACAGCTAGAAAAATCAAATTCTGAGAAACCTTCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGACTACCCCTAAATGTAAGGGGACTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 6 2463599-2464096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2463599 36 100.0 30 .................................... TTTATTAGTTGTTCATCTGTTTTTTTTTAA 2463665 36 100.0 30 .................................... CTACAAAAACGACTAAAAAAGCGTTTAAAG 2463731 36 100.0 30 .................................... TTTGGTTGTACCCCTTTTTGAACATATAGG 2463797 36 100.0 30 .................................... TGCGTAATGATGAGGTGGCAGAATCAATGC 2463863 36 100.0 30 .................................... CATAAAACCTTGATTTTCATAAGATATATC 2463929 36 100.0 30 .................................... CCAATAGTCAATTCTGTTAGCCAGTAGGGA 2463995 36 100.0 30 .................................... TGCTATATAAACTGATGTACCTGTAATAGC 2464061 36 77.8 0 ........T.CT.C......A......A.TA..... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 AATATAAACTACCTCTAAATGTAAGAGGACTATAAC # Left flank : GATCGTAAATTAAAAAATGCGGTCACAAAAGCGATAATTAAAATTCTTGATAAACATGGAATGATATTAAAATTGACAAATAATGATCATACGAAACCCTTTGAAATAGAATCTTTAAAGCCAAAGAAAATTATTCATTTAGAGAAATCAAATCATTCATTTCCAATGGATCAAGTTTCCCAAGAATATTGTGACTTAGTTAAAAAAATGTTGGTATTTACAAATTAACTATGTTATTATTTAAGTGCAACCCCTTTTTATCTTATAAATTTGAGACCAATGTGTTTTAAATTTATTGAAAAGAGGAGCAAAAAGAATGAAAACTAAATTTACTGTTAAAGGTTTAAAGAAGTTTGTGCGCGAACATCCAGAGGTGTTTGTACAAATCATGCTTTGGGTTGTAGATCGACTGTTCTTTTAAGAACAGTCTTTTTTGTCCGTATTTTTCCAAAGAAAAACGAGCTTGAACCCTTGCTGTATATATGATAGAGTTGAGGGGT # Right flank : CTCAATCTCTTCATTCGTATTTTGTCTAGTTAAGATAAGTACCACCAAATACAATCAATCCAAAAAAGCTACTAAACAGCTATTATTGTTTATTGGCTTTTTTATACGTTAGTTCATTAAAGTGAGTAATCTAAGTTCAACTAATTGTCTATATTTATTGCATTCCCCAATAAACAGGTATAAACTAGAAGTTCACTATTTTAAGAAATGGGGAAATGTGGATGAGTCAAACTGAATTGGAAAAGGAAACGTTGTATTTACAACAGGTTTATCAAAAGTTGGTTCAAGCAGAAACTGAATTTACTGAGATTTTGGAAAATGCGAAGGACGATGGGCTTGCTACCTTAGAGTCTATGAAGGGGGATGTCGGTCTCAATTTTGATAATTATTCAGAGAACTTAGATACCTTTGCTGCGATTGAAATGAAGAATCGTGAAATTGATCAAATGAACTTAAAAGTAAGAACAGCGGATATAACGCTTCAAAAAGTGAAACGACTA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATATAAACTACCTCTAAATGTAAGAGGACTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 2514115-2514876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2514115 36 100.0 30 .................................... ACAAGTCTTTGCTGATAAACGTTAAGAACC 2514181 36 100.0 30 .................................... AACACCTTTAACGCTTGTTTGTTTTCTATT 2514247 36 100.0 30 .................................... AGTTTGGTTGTCATTGGGTTGTCGTTCCTT 2514313 36 100.0 30 .................................... ATCAAATGTATTGTTCTTTGTATGATTCAG 2514379 36 100.0 30 .................................... CGAGATTATGACTCACATCTGGAACGTACT 2514445 36 100.0 30 .................................... TGAATCAACGCTTTATACCACATTGAATCC 2514511 36 100.0 30 .................................... TAGATAAACGGTAGTAATAATTTAAACGCT 2514577 36 100.0 30 .................................... GCATCCATCCATCGTGTGGTTGTTTTCGAA 2514643 36 100.0 30 .................................... CGACCTTGTCCTTTGTAACAAAGTAATTAT 2514709 36 100.0 30 .................................... AGACTAATCATATCTTTTACAACCGATTTT 2514775 36 100.0 30 .................................... CAATCAACTTTCCACCATTTTTTAAAGGAT 2514841 36 94.4 0 ....................A....A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 ACTACATTATAGCTGATTCTGTAAGGAAACTATAGC # Left flank : GAAGAAGAATATCATTCTCTCGCAAATGGTTTGAAGAAAACAACAGCGTCTTTTGTAAGTTGTTGTAAAAATAATAGTGCCGCCTTATTAAAAGTACCTGATTTAATGGTACTACGGCCACATGAGTATGAATAGATTTATGCGAATTCTTGTCATGTTTGATTTACCAGTAGGATCAAAACGAGAGCGAAGAGAAGCAGTGAGATTCAGAAATTATTTATTAAATGAAGGCTATGTAATGATGCAGTTTTCAGTTTATTATCGTATTTGTAGTGGATATGATATGGTTAAAAAATATGAGCATAAATTAGAACGACATTTACCAAATCAAGGTTCAGTCAGAATGGTTTGTATGACGGAAAAACAATTTTCCAGCATGAAATTATTAGTTGGGGACGACTTAGAGAATGAAAAGAAGGTAAATTCTTCAAGTTTGTCCATTTTTTAGCCAACAAAAAAGCCGCAGAAACGTTGATGTTCTGCGGTTTTTTGCTTAGGGT # Right flank : CCCTTGACTATATATTACTACATTATAGCATTGTTTTATCAGGTAAGATGTTGGTTAATACTACATAAAAACACCCTATTTATTTTAAGATAAGAAGAAAGAGTCTCTATAATATTAGCTCGAAGGTTACAGCTTTTTGCTTATTTCAATGCAAAAAACAAGTGGAAAAGATTGTTATAGGTAAAGTTTCAAACGTTATTAAAATGATTTTTAAATTGTTAGAATAGTAAAAGTATGATTGGAGGTGTTAAAAATAGAGGATTCTTTATTAAATCGGCTAAATGAAGAATAGTAAAATTAAGAAAATCACTATAATTTAAACTATTTCCGTATGTTACCCATAAGATATATGAAAAAATTTAAACGCCAAATAGAGAAAATGCTCTAAAAAGTAAATTGTTTAAACCCAAGAAAAATGTTAGAGCATTCTCAAAAATGTTAAAGCATTCCCAAAAAAGTTAAAGAAAATTATGAAGAATACGAGCAAGCTTAACCTGCAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTACATTATAGCTGATTCTGTAAGGAAACTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 8 2529503-2530066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLU01000005.1 Carnobacterium gallinarum DSM 4847 strain MT44 BR43DRAFT_scf7180000000012_quiver.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2529503 36 100.0 30 .................................... TCTGTTTCTATCTTTTTTAAATTTTTAGTA 2529569 36 100.0 30 .................................... TTGCGAAGTACAAGTTTGATGAACTTACTG 2529635 36 100.0 30 .................................... TCTTTCTTTCACTTTCATTTTTCTAATTTT 2529701 36 100.0 30 .................................... AATGAGTAATCAACACCTTCAATTTTGTTT 2529767 36 100.0 30 .................................... TGTAGTGAGTGTTCAAGTAAACGTTAATAA 2529833 36 100.0 30 .................................... TCATCAATGACTGACAAAATTAAAGCACCA 2529899 36 100.0 30 .................................... ACCTTGACGCTAAAGCAGTCTATCACACAC 2529965 36 100.0 30 .................................... CTCGAAAGTCTATTGATCAGTCCATTTATA 2530031 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 ACTACATTATAGCTGATTCTGTAAGGAAACTATAGC # Left flank : AGTGATAAGGTGAAAGAAACTCTTCCTAACCAAGCTTCTGCAGGTGGTAAGAATTCAAAAGATTGGCCAGTTGTTAAGCCAGAGGACTTTTTATTTTCACTTTACCCAAATGATTTAATTCGCATTAAGCATAAAAAAGGGGTAAAACATACTTCAAAAGACGGAAATAAGGAAGTAGAAATTAAATCAGATTTTTTTGCGTACTACAAAGGAGCTAATATCTCAACCGCTAGTATTTCTGGAATTAATCACAATAACTTTTTTGAATTTGAAGGTGTGGGCTTAGCTACTTTAATCAGTCTAGAGAAATATCGAGTGGATTACTTTGGTAATTACTATAAAGTGAATGAAAAAATACGTCAAGAATTCCACAAAAAATAAATTTGCCATTAAATGAATGAAAGACATCTAAAAATAAGAATAATTTAAAATTGTGTCCATTTTTTAGCCAGCAAAAAAGCCGTAGAAACGTTGAGGTTCTGCGGCTTTTTGCTGAGGGT # Right flank : CAAAAACCAATCAACATATTTAATTTATTTTAACGCTCTACAATGATTTTCATAGGAGAATCATATACATATTTTGGTTTTTGTTGACAAATTTGATAAACAATATTAATGTATGTTTAGATGTCTAAGAGGTGAAGCGATGGATTTAGGGAAAAGAACATTTCAAGAAATCAAACAAGGATACTTTCTAGCTGAGGAAGGTTACCATTGTCATTATTGTGAGGAAAATTTTTCAATCAATCAAGTTTATTCTCTTAACGATAAAATCTATATGGCCCAGCAAGCTATTCAGCAGCACATTGAGATAGAACACAGTGGGAATTTTCAACAATTAGTGGGAAATGAAAGCAAATATAATACGTTAACTGAAAAGCAGAAGCAGTTATTAATTGAATTTGAAAGTGGTGAATCAGATGCAGAAATTGCTAAAAATTTGGGTGTATCTCATTCGACAATTCGGCATCAAAAATTTACTTTTCGTGAAAAGGCCAAGCAAGCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTACATTATAGCTGATTCTGTAAGGAAACTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //